Table 1.
Summary of the genome assembly and annotation of E. crus-galli
| Sequencing and assembly | ||||
| Sequencing | Insert libraries | Illumina | Pacbio RS II | Total size (Gb) |
| 160 bp-20 Kb | 148.2× | 23.5× | 240.3 | |
| Scaffold | N50 size (Mb) | N90 size (Kb) | The longest (Mb) | Total non-N size (Gb) |
| 1.80 | 453.89 | 11.70 | 1.27 | |
| Genome annotation | ||||
| Protein-coding gene | Gene models | Supported by homologsa | Supported by EST and Swiss-prot etc.b | Gene size (bp) |
| 108,771 | 74.2% | 85.17% | 1,901 | |
| Non-coding RNA | miRNA | tRNA | rRNA | snoRNA |
| 785 | 2306 | 1890 | 3378 | |
| Repetitive elements (%) | LTR | LINEs& SINEs | DNA transposon | Total |
| 21.9 | 2.5 | 8.0 | 40.7 | |
aAnnotated gene sets of six sequenced plants (B. distachyon, O. sativa, S. bicolor, Z. mays, S. italic, and A. thaliana)
bSwiss-prot, InterProt and nr databases are included