ABSTRACT
We examined the responses of sound-treated arabidopsis adult plants to water deprivation and the associated changes on gene expression. The survival of drought-induced plants was significantly higher in the sound treated plants (24,8%) compared with plants kept in silence (13,3%). RNA-seq revealed significant upregulation of 87 genes including 32 genes involved in abiotic stress responses, 31 involved in pathogen responses, 11 involved in oxidation-reduction processes, 5 involved in the regulation of transcription, 2 genes involved in protein phosphorylation/dephosphorylation and 13 involved in jasmonic acid or ethylene synthesis or responses. In addition, 2 genes involved in the responses to mechanical stimulus were also induced by sound, suggesting that touch and sound have at least partially common perception and signaling events.
KEYWORDS: Bioacoustics, mechano-stimulus, touch, water stress, white noise
Sounds are mechanical waves of pressure that propagate through a transmission medium such as air. As a wave of pressure, the sound can be considered as a mechanical stimulus and it could have an influence on developmental and physiologic plant processes35,17,29 Different types of sound have been demonstrated to increase the growth of mung bean, rice, cucumber and arabidopsis seedlings34,20,5 increased the leaf area in young strawberry plants31 and increased the root length in Actinidia chinensis and paddy rice3,43 Some sounds seems to be capable of orienting root growth13,12 and significantly increased the callus growth in Dendranthema morifolium47 and Chrysanthemum.40 There are also evidences that determinate sounds can influence the development of fruits, for example, delaying tomato fruit ripening,22 has an influence in pollination, for example, in buzz-pollination the pollen from anthers is only released upon vibration at a particular frequency produced by bee buzz.9 In a similar way, bat dependent plants have adapted to the bats’ echolocation systems by providing acoustic reflectors to attract their animal partners.33 Active acoustic signaling in plants has been proposed although it is still under discussion.11
Sound-induced changes in plants have also been observed at the physiologic level. Some sounds increased the photosynthetic state of strawberry plants48,28 The photosynthetic performance index in sound-treated arabidopsis plants was lower compared with the control,14 and the expression of different genes encoding for RuBisCO subunits was altered.15 In arabidopsis, sound altered the expression of several enzymes involved in light reaction, Calvin cycle, glycolysis and TCA cycle, with majority of them being upregulated.15 Sound alters the levels of some phytohormones: increased polyamine content in chinese cabbage and cucumber,32 ethylene production was lower in the sound-treated tomatoes22 and sound increased the level of indole acetic acid (IAA) and decreased the level of abscisic acid in Chrysanthemum calli.4 In arabidopsis, sound induced changes in the levels of gibberelins, auxins, jasmonic and salicilic acids, but not in ABA.15 Sound has also the ability to alter antioxidant activities18,41,29,15 and to increase oxygen uptake,32 thus appears that ROS signaling is a player for sound-mediated signaling. Sound also induces the accumulation of ATP39,43,29 increases plasma membrane H+-ATPase activity38,44 induces a higher electrolyte leakage in arabidopsis,14 alters the calcium flux and increases the concentration of intracellular Ca2+25,38,44,29 Additional observed changes in cell composition induced by sound are an increase in soluble sugars19,45,47 changes in free amino acid contents27 and the induction of lipid peroxidation.24 Sound-induced changes in cell structure have also been observed. Sound altered the secondary structure of cell-wall proteins49 and the plasma membrane fluidity and permeability21,46,43,29
Sound produced no significant increase of DNA content but enhanced the synthesis of RNA and soluble proteins in Chrysanthemum.42 A significant increase in the expression of the rice genes coding for a fructose 1,6-bisphosphate aldolase (ald) and ribulose 1,5-bisphosphate carboxylase (Rubisco) small subunit (rbcS) was observed and the ald promoter was shown to respond to specific sound frequencies.18 The expression level of several ethylene biosynthetic and ripening-regulated genes was influenced by sound in tomato fruits.22 A recent microarray analysis in arabidopsis plants noted that several genes were differentially expressed after sound treatment15 and some of them are also induced by mechanical stimulus.14 Changes in protein accumulation were observed in response to sound.15 Many respiratory genes/proteins were upregulated as well as amino acid biosynthetic enzymes, enzymes related to protein metabolism, folding and degradation and genes involved in sulfur, nitrogen and carbohydrate metabolism.15 The arabidopsis transcriptomic and proteomic analyses showed the induction/accumulation of several stress- and pathogen defense-related genes/proteins.15 Induction of defense mechanism by sound was previously observed.8 Sound enhanced the resistance of strawberry against diseases and insects,31 vibration in arabidopsis leads to the accumulation of defense molecules1 and sound increased their resistance against Botrytis infection.7 The treatment of plants with specific sound frequencies increased the disease resistance in pepper, cucumber, and tomato.36
All these data suggest the existence of molecular mechanisms for sound perception and signal transduction in plants and sound seems to induce plants defense mechanisms against pathogens and against different abiotic stresses.
Our results were focused on determining possible effects of sound on drought resistance of Arabidopsis thaliana plants and on the possible induced changes in gene expression. A precise description of the methods used is presented in the Supplemental File 1.
To explore a possible effect of sound in plant drought resistance, 6-week-old Arabidopsis plants grown at 22°C with a 8/16-h light-dark photoperiod were treated with 10 h 100 dB of white noise at the middle of the dark period during one week. Control plants were kept in silence. Irrigation was stopped at the beginning of the sound treatment. After the 2 weeks of drought the plants were re-watered. The survival rates were calculated one week after re-watering (Supplemental File 2). Sound treated plants showed an increased drought tolerance and resulted in significantly higher survival rates compared with untreated plants (Fig. 1): 24,8% (± 3.81) of the sound-treated plants surveyed compared with 13,3% (± 3.16) of the plants kept silence. This difference is statistically significant and indicate that the white noise increases arabidopsis drought tolerance.
Figure 1.

Increase in the drought resistance in arabidopsis plants exposed to white noise. The percentage of plant survival is indicated. Bars represent the standard errors.
The possible transcriptomic changes in arabidopsis upon exposure to sound were investigated through RNA-seq analysis. Six week old plants at the rosette stage were exposed during 10 h to 100 db white noise during the night and the samples were collected just at the end of the sound treatment. The samples corresponded to the eight youngest leaves of the rosette. The control samples were collected in the same moment with the only difference that the plants were not exposed to sound. Total RNA was extracted, cDNA libraries constructed and sequencing runs were performed in the Illumina HiSeq 2000 platform. A total of 3.65 × 108 reads were generated. Of the clean reads, 94.4% were uniquely mapped to the arabidopsis reference genome sequence. The normalized FPKM was used to quantify the gene expression level37 to reveal differentially expressed genes. The expression of 89 genes was considered to be altered by sound (log2 fold change > = 2 and q-value < 0.05): 87 upregulated and 2 downregulated (Table 1). To validate RNA-seq results, RT-PCR was done to reveal the trend in the expression pattern of genes (Fig. 2). Expression of 6 genes was validated. In all the cases the RT-PCR results confirmed the patterns of expression obtained in the RNA-seq analysis.
Table 1.
List of the Significantly Induced Genes in arabidopsis leaves after white noise treatment (log2 fold change > = 2 and q-value < 0.05).
| Gene_id | Gene | WN/CON | CON | WN | p-value | q-value |
|---|---|---|---|---|---|---|
| AT1G13607 | Defensin-like | a | 0,0 | 1,4 | 5,0e-05 | 0,00601 |
| AT1G68825 | Devil 5; Rotundifolia-like 15 | a | 0,0 | 0,4 | 2,0e-04 | 0,01862 |
| AT2G31930 | Unknown protein | a | 0,0 | 0,9 | 5,0e-05 | 0,00601 |
| AT4G01535 | Unknown protein | a | 0,0 | 1,4 | 5,0e-05 | 0,00601 |
| AT5G38700 | Cotton fiber protein | a | 0,0 | 0,5 | 5,0e-05 | 0,00601 |
| AT4G01360 | BYPASS 3 | 41,6 | 0,2 | 7,9 | 5,0e-05 | 0,00601 |
| AT4G30280 | Xyloglucan endotransglucosylase /Hydrolase 18 | 26,5 | 0,5 | 12,0 | 5,0e-05 | 0,00601 |
| AT1G35140 | Exordium like 1; Phosphate-induced 1 | 25,1 | 0,5 | 12,0 | 5,0e-05 | 0,00601 |
| AT5G52050 | Detoxification efflux carrier 50 | 21,1 | 0,2 | 3,2 | 5,0e-05 | 0,00601 |
| AT3G56790 | RNA splicing factor-like | 19,3 | 0,6 | 11,3 | 5,0e-05 | 0,00601 |
| AT2G14247 | Unknown protein | 19,0 | 0,7 | 12,6 | 5,0e-05 | 0,00601 |
| AT1G19210 | DREB subfamily A-5 ERF/AP2 transcription factor | 18,8 | 3,3 | 62,2 | 5,0e-05 | 0,00601 |
| AT4G24580 | ROP1 ENHANCER 1, Rho GTPase-activating protein | 18,2 | 0,1 | 1,9 | 5,0e-05 | 0,00601 |
| AT3G56970 | Basic Helix-Loop-Helix 38; OBP3-Responsive Gene 3 | 15,6 | 0,7 | 11,0 | 5,0e-05 | 0,00601 |
| AT1G50750 | Aminotransferase-like mobile domain protein | 14,3 | 0,2 | 3,1 | 5,0e-05 | 0,00601 |
| AT2G17660 | RPM1-interacting protein 4 | 12,6 | 0,9 | 10,7 | 5,0e-05 | 0,00601 |
| AT3G02840 | ARM repeat superfamily protein | 11,5 | 11,1 | 126,7 | 5,0e-05 | 0,00601 |
| AT3G44350 | NAC domain containing protein 61 | 11,3 | 0,4 | 4,8 | 5,0e-05 | 0,00601 |
| AT1G80840 | WRKY DNA-binding protein 40 | 11,2 | 21,1 | 237,1 | 7,0e-04 | 0,04911 |
| AT2G32130 | Intracellular protein transporter putative (DUF641) | 10,4 | 0,5 | 5,5 | 5,0e-05 | 0,00601 |
| AT5G42380 | Calmodulin like 37 | 10,4 | 4,5 | 47,2 | 5,0e-05 | 0,00601 |
| AT3G23250 | MYB domain protein 15 | 9,9 | 1,8 | 17,7 | 5,0e-05 | 0,00601 |
| AT4G29780 | Nuclease | 9,9 | 17,8 | 175,2 | 5,0e-05 | 0,00601 |
| AT3G01830 | Calcium-binding EF-hand family protein | 9,4 | 2,9 | 27,5 | 1,0e-04 | 0,01106 |
| AT1G61340 | F-BOX stress induced 1 | 8,9 | 4,6 | 40,7 | 5,0e-05 | 0,00601 |
| AT5G22240 | Ovate family protein 10 | 8,9 | 1,7 | 15,4 | 5,0e-05 | 0,00601 |
| AT1G66090 | Disease resistance protein TIR-NBS class | 8,8 | 4,9 | 43,3 | 5,0e-05 | 0,00601 |
| AT1G72520 | Lipoxinegase 4 | 8,3 | 2,5 | 21,0 | 5,0e-05 | 0,00601 |
| AT2G30020 | MAPK phosphatase clade B of the PP2C-superfamily | 7,9 | 33,0 | 259,2 | 5,0e-05 | 0,00601 |
| AT5G57560 | TOUCH 4; Xyloglucan endotransglucosylase/hydrolase 22 | 7,5 | 20,4 | 153,5 | 5,0e-05 | 0,00601 |
| AT2G35930 | U-BOX 23; E3 ubiquitin ligase | 7,2 | 7,8 | 55,6 | 5,0e-05 | 0,00601 |
| AT5G45340 | Cytochrome P450 family 707 Subfamily A Polypeptide 3 | 7,1 | 10,5 | 74,7 | 5,0e-05 | 0,00601 |
| AT2G46400 | WRKY DNA-binding protein 46 | 7,1 | 10,8 | 76,4 | 5,0e-05 | 0,00601 |
| AT3G28340 | Galactinol synthase 8; Galacturonosyl transferase-like 10 | 6,9 | 2,3 | 16,2 | 5,0e-05 | 0,00601 |
| AT2G34600 | Jasmonate-zim-domain protein 7; TIFY5B | 6,9 | 1,2 | 8,6 | 5,0e-05 | 0,00601 |
| AT3G46090 | C2H2 and C2HC zinc fingers superfamily | 6,8 | 1,6 | 10,9 | 5,0e-05 | 0,00601 |
| AT1G22480 | Cupredoxin superfamily protein | 6,6 | 0,3 | 2,2 | 5,0e-05 | 0,00601 |
| AT1G30135 | Jasmonate-ZIM-domain protein 8 | 6,6 | 1,7 | 11,4 | 5,0e-05 | 0,00601 |
| AT3G61190 | BON Association protein 1 | 6,5 | 10,8 | 70,7 | 5,0e-05 | 0,00601 |
| AT4G25490 | C-Repeat/DRE Binding Factor 1; DRE Binding protein 1B | 6,5 | 4,2 | 27,1 | 5,0e-05 | 0,00601 |
| AT5G05390 | Laccase 12 | 6,4 | 0,3 | 1,7 | 3,0e-04 | 0,02536 |
| AT1G56660 | MAEBL domain protein | 6,4 | 7,2 | 46,1 | 5,0e-05 | 0,00601 |
| AT3G52450 | U-BOX 22 U-box domain E3 ubiquitin ligase | 6,3 | 3,4 | 21,9 | 5,0e-05 | 0,00601 |
| AT1G74930 | DREB subfamily A-5 of ERF/AP2 transcription factor | 6,1 | 43,4 | 263,4 | 5,0e-05 | 0,00601 |
| AT1G17420 | Lipoxynease 3 | 5,8 | 3,5 | 20,0 | 5,0e-05 | 0,00601 |
| AT1G28480 | Glutaredoxin GR480 | 5,7 | 5,1 | 29,2 | 5,0e-05 | 0,00601 |
| AT1G76650 | Calmodulin-Like 38 | 5,5 | 94,5 | 517,1 | 5,0e-05 | 0,00601 |
| AT3G55980 | Salt-inducible Zinc Finger 1 | 5,5 | 52,0 | 284,0 | 2,5e-04 | 0,02220 |
| AT5G64870 | SPFH/Band 7/PHB domain-containing membrane-associated | 5,4 | 1,6 | 8,5 | 5,0e-05 | 0,00601 |
| AT1G47400 | Unknown protein | 5,4 | 3,3 | 17,9 | 5,0e-05 | 0,00601 |
| AT1G01560 | MAP Kinase 11 | 5,4 | 4,1 | 22,3 | 5,0e-05 | 0,00601 |
| AT5G35735 | Auxin-responsive family protein | 5,4 | 19,1 | 103,7 | 5,0e-05 | 0,00601 |
| AT2G14610 | Pathogenesis related 1 | 5,4 | 1,0 | 5,2 | 5,0e-05 | 0,00601 |
| AT1G02400 | Gibberellin 2-Oxidase 4 | 5,4 | 1,4 | 7,6 | 5,0e-05 | 0,00601 |
| AT4G39670 | Glycolipid transfer protein | 5,3 | 5,4 | 28,6 | 5,0e-05 | 0,00601 |
| AT5G47850 | CRINKLY related 4 | 5,3 | 0,5 | 2,5 | 5,0e-05 | 0,00601 |
| AT2G01180 | Lipid phosphate phosphatase 1; Phosphatidic acid phosphatase 1 | 5,2 | 6,6 | 34,1 | 5,0e-05 | 0,00601 |
| AT3G62260 | Protein phosphatase 2C | 5,1 | 11,6 | 59,2 | 5,0e-05 | 0,00601 |
| AT1G74450 | Unknown protein | 5,1 | 24,6 | 124,1 | 5,0e-05 | 0,00601 |
| AT5G66650 | Calcium uniporter (DUF607) | 5,0 | 4,2 | 21,0 | 5,0e-05 | 0,00601 |
| AT2G14290 | LL-diaminopimelate protein (DUF295) | 5,0 | 0,3 | 1,3 | 5,5e-04 | 0,04080 |
| AT1G18300 | NUDIX Hydrolase homolog 4 | 4,7 | 92,6 | 438,8 | 5,0e-05 | 0,00601 |
| AT4G11280 | 1-Aminocyclopropane-1-carboxylic acid synthase 6 | 4,7 | 32,3 | 152,8 | 1,0e-04 | 0,01106 |
| AT4G25470 | C-REPEAT/DRE binding factor 2; DRE/CRT-Binding protein 1C; Freezing tolerance QTL4 | 4,7 | 23,0 | 108,4 | 5,0e-05 | 0,00601 |
| AT5G41750 | Disease resistance protein (TIR-NBS-LRR class) | 4,7 | 2,4 | 11,2 | 5,0e-05 | 0,00601 |
| AT5G21960 | DREB subfamily A-5 of ERF/AP2 transcription factor | 4,7 | 7,7 | 36,0 | 5,0e-05 | 0,00601 |
| AT1G66160 | CYS MET PRO and GLY Protein 1 | 4,7 | 3,3 | 15,4 | 5,0e-05 | 0,00601 |
| AT5G22545 | Unknown protein | 4,7 | 3,1 | 14,5 | 5,0e-05 | 0,00601 |
| AT2G41640 | Glycosyltransferase family 61 | 4,7 | 12,2 | 57,1 | 5,0e-05 | 0,00601 |
| AT2G30040 | Mitogen-activated protein kinase kinase kinase 14 | 4,6 | 9,0 | 41,8 | 5,0e-05 | 0,00601 |
| AT5G64310 | Arabinogalactan 1 | 4,6 | 20,7 | 95,7 | 5,0e-05 | 0,00601 |
| AT2G23810 | TETRASPANIN 8 | 4,6 | 39,9 | 182,8 | 5,0e-05 | 0,00601 |
| AT1G47395 | Unknown protein | 4,5 | 8,6 | 38,7 | 5,0e-05 | 0,00601 |
| AT1G60190 | ATPUB19: U-BOX 19 | 4,5 | 14,4 | 64,8 | 5,0e-05 | 0,00601 |
| AT1G72950 | Disease resistance protein (TIR-NBS class) | 4,5 | 2,0 | 8,9 | 5,0e-05 | 0,00601 |
| AT2G40140 | Salt-inducible Zinc Finger 2 | 4,5 | 26,5 | 118,3 | 1,0e-04 | 0,01106 |
| AT1G02660 | α/β-Hydrolases superfamily | 4,5 | 1,2 | 5,2 | 5,0e-05 | 0,00601 |
| AT4G24380 | Dihydrofolate reductase | 4,5 | 21,1 | 93,8 | 2,5e-04 | 0,02220 |
| AT2G44840 | Ethylene-responsive Element Binding Factor 13 | 4,4 | 6,9 | 30,5 | 5,0e-05 | 0,00601 |
| AT5G05410 | Dehydration-responsive element binding protein 2 | 4,4 | 1,1 | 4,8 | 1,5e-04 | 0,01528 |
| AT1G17380 | Jasmonate-ZIM-domain protein 5; TIFY11A | 4,3 | 8,8 | 38,2 | 5,0e-05 | 0,00601 |
| AT3G50930 | Cytochrome BC1 Synhtesis; Outer Mitochondrial Membrane Protein | 4,3 | 8,6 | 36,4 | 5,0e-05 | 0,00601 |
| AT3G10930 | IDA-LIKE7, IDL7 | 4,2 | 28,0 | 116,9 | 5,0e-05 | 0,00601 |
| AT1G76600 | Polymerase | 4,2 | 20,2 | 84,3 | 5,0e-05 | 0,00601 |
| AT2G39650 | Cruciferin (DUF506) | 4,1 | 6,4 | 26,1 | 5,0e-05 | 0,00601 |
| AT3G46620 | RING and DOMAIN of unknown function 1117 1 | 4,1 | 57,1 | 234,8 | 3,0e-04 | 0,02536 |
| AT5G03210 | DBP-Interacting-protein 2 | 4,1 | 30,2 | 122,3 | 5,0e-05 | 0,00601 |
| ATCG01130 | Translocon at the inner envelope membrane of chloroplasts 214 | 4,3b | 0,7 | 0,2 | 5,0e-05 | 0,00601 |
| AT4G03445 | miR447A, targets several 2-phosphoglycerate kinase-related | c | 1,1 | 0,0 | 6,0e-04 | 0,04335 |
expression was only detected in the sound treated samples
expression was higher in the control sample
expression was only detected in the control samples
Figure 2.

RT-PCR analysis of the expression profiles of 6 arabidopsis genes identified as differentially expressed by RNA-seq, all them significantly overexpressed in the sound treated plants (WN) respect to the controls (CON). Ethidium bromide stained 1.5% agarose gels showing RT-PCR products. The genes are (see Table 1): DEFL, At1g13607; DVL5, At1g68825; UNK1, At2g31930; UNK2, At4g01535; UNK3, At5g38700; BPS3, At4g01360. ACT7 corresponds to actin7 (At5g09810) and was used as control of non-induced gene. In each case, the size of the band shown is those expected.
A GO analysis was performed to determine the function of the identified differentially expressed genes (Supplemental Files 3 and 4). From the 87 upregulated genes, 44 (51%) are involved in responses to different types of stresses and the function of 22 is unknown. To confirm the enrichment in stress-related genes a GO enrichment analysis was performed (Table 2). Most of the 15 significantly overrepresented GO terms are related to stress, defense or response to stimulus.
Table 2.
GO ontology enrichment analysis showing significant over-represented functional categories in the leaves of sound treated arabidopsis plants compared with all genes.
| Name of the annotation data category | Total1 | Induced2 | Expected3 | Fold Enrichment4 | P value5 |
|---|---|---|---|---|---|
| Response to chitin | 109 | 9 | 0,35 | 25,66 | 2.35E-07 |
| Response to organonitrogen compound | 154 | 10 | 0,50 | 20,18 | 2.08E-07 |
| Response to nitrogen compound | 228 | 11 | 0,73 | 15,00 | 5.15E-07 |
| Response to wounding | 182 | 8 | 0,59 | 13,66 | 3.31E-04 |
| Response to jasmonic acid | 172 | 7 | 0,55 | 12,65 | 3.40E-03 |
| Response to acid chemical | 886 | 21 | 2,85 | 7,37 | 1.37E-09 |
| Response to oxygen-containing compound | 1144 | 26 | 3,68 | 7,06 | 3.55E-12 |
| 356 | 8 | 1,15 | 6,98 | 4.51E-02 | |
| Response to inorganic substance | 690 | 13 | 2,22 | 5,86 | 7.38E-04 |
| Response to organic substance | 1466 | 22 | 4,72 | 4,66 | 2.25E-06 |
| Defense response | 1253 | 18 | 4,03 | 4,47 | 1.87E-04 |
| Response to chemical | 2084 | 28 | 6,70 | 4,18 | 8.04E-08 |
| Response to stress | 2639 | 31 | 8,49 | 3,65 | 1.50E-07 |
| Response to abiotic stimulus | 1491 | 17 | 4,80 | 3,54 | 1.05E-02 |
| Response to stimulus | 4612 | 40 | 14,84 | 2,70 | 8.66E-07 |
Total number of genes in each annotation data category in Arabidopsis thaliana.
The number of induced genes in each annotation data category.
The number of genes you would expect in each annotation data category in Arabidopsis thaliana according to the total number of induced genes supposing a random distribution.
Number of induced genes in each annotation data category divided by the expected number. If it is greater than 1, it indicates that the category is overrepresented.
The p-value determined by the binomial statistic. This is the probability that the number of genes you observed in this category occurred by chance (randomly).
Our results open new aspects of the discussion on the possible effects of sound on plants. Despite the growing data on different effects of sound in plants,17,29 the detailed molecular events triggered by sound still remain mainly unknown. To get some more insight in this area, we performed an RNA-seq assay and we noted differential gene expression of many genes in arabidopsis rosette leaves and we found that sound treatment increases the tolerance to water deficit of the arabidopsis plants.
Different mechanisms have been proposed to explain sound effects on plants. For example, sound stimulation might cause leaves’ stomata to open.28 Another theory is that sounds induce in plants a similar response as touching (thigmomorphogenesis).6 Like sound, touch is as an external mechanical force which interacts with the plant surface. Interestingly, described thigmomorphogenetic responses include resistance to other stresses. Transcriptomic studies had identified mechanoresponsive genes, including TOUCH genes (TCH) that mainly encode calmodulins or calmodulin-like proteins and xyloglucan endo-transglycosylase/hydrolase (XTH),6 genes encoding protein kinases,30 transcription factors,16 genes involved in jasmonic acid and ethylene synthesis26,2 or genes involved in antioxidative responses.10 A transcriptome analysis of touch-stimulated arabidopsis rosette leaves identified over 700 differentially expressed genes,23 most of them upregulated. Up-regulated genes were specially enriched in calcium-binding proteins, cell-wall proteins, disease resistance proteins, kinases and transcription factors.
Our RNA-seq results present similarities to what was observed after touch induction, for example, we also observed a predominant upregulation, and two genes directly involved in mechanical responses are among those upregulated genes: TCH4, encoding a xyloglucan endotransglucosylase/hydrolase, and ACS6, encoding the 1-aminocyclopropane-1-carboxylic acid synthase 6. White-noise upregulated genes include at least 32 genes involved in abiotic stress responses, 31 involved in pathogen responses, 11 involved in oxidation-reduction processes, 5 involved in transcription regulation, 2 genes involved in protein phosphorylation/dephosphorylation and 13 involved in jasmonic acid or ethylene synthesis or responses. Similar results were obtained in a microarray analysis based on single frequency treatments in Arabidiopsis.15,12
Cell-walls play an important role in the perception of the mechanical stimulus.35 We have identified at least four genes whose function is related to cell-walls: TCH4, laccase12, GOLS8 and XTH18. TCH4 encodes a cell-wall modifying enzyme that breaks the xyloglucan chains and make the cell-wall more elastic. The cell-wall interacts with the cell membrane, which, in turn, interacts with the cytoskeleton, which can modify the activity of ion channels, resulting in changes in the concentration of ions like calcium in the cytoplasm, which can activate several calcium binding proteins and kinases which can induce huge changes in the transcriptome and proteome, which eventually affect several vital processes, like growth, development and defense against pathogens or abiotic stresses. Supporting this hypothesis, two upregulated genes encode calcium related proteins: a calcium-binding EF-hand family protein and a calcium uniporter. Previous results also indicate that ROS signaling is another player for sound-mediated signaling.32,18,41,29,15 We identified 11 upregulated genes involved in different aspects of oxidation-reduction processes. It thus appears that ROS signaling is an important player also for sound perception. Calcium, ROS and possibly hormonal changes may probably explain most of the effects of the sound response signaling previously observed as changes in the development and the induction of pathogen resistance, and also the induction of at least 32 genes involved in different aspects of abiotic stress, including 9 genes directly involved in water stress responses, and may explain our observed increase in water deficit tolerance.
We can conclude that sound has an impact on plants probably through a perception mechanism at least partially common to that of mechanical stimuli. Previous and our experiments demonstrate that plants can respond to sounds but each experiment has been performed using different parameters, so it is difficult to systematize the results. The conditions needed may depend on each species, the tissue and the phenomenon studied, or the frequencies, intensity or duration of the sound. Another interesting question is whether sound responses are relevant in natural conditions or just a side effect of mechanoperception. The acoustic responses of plants can offer insights into innovative practical applications such as reducing the negative effects of water deficit or a reduction in the use of pesticides. In addition, the use of sound-induced promoters may have interesting biotechnological applications.
Supplementary Material
Disclosure of potential conflicts of interest
No potential conflicts of interests were disclosed
Acknownledgments
This work is part of a Explora project participated by the members of the CRAG's Program of Plant Metabolism and Metabolic Engineering and funded by the Spanish MINECO (BFU2013–50058-EXP). We would like to acknowledge the financial contribution to the research activities by the Spanish Ministry of Economy and Competitiveness through the “Severo Ochoa Program for Centers of Excellence in R&D” 2016–2019 (SEV‐2015‐0533), and by the CERCA Program / Generalitat de Catalunya, AGAUR (2014SGR-1434).
Declaration of authorship
ILR performed the RNA extractions. CMV conceived and designed the experiments, analyzed the data and wrote the manuscript.
Funding details
This work is part of a Explora project participated by the members of the CRAG's Program of Plant Metabolism and Metabolic Engineering and funded by the Spanish MINECO (BFU2013–50058-EXP). We would like to acknowledge the financial contribution to the research activities by the Spanish Ministry of Economy and Competitiveness through the “Severo Ochoa Program for Centers of Excellence in R&D” 2016–2019 (SEV‐2015‐0533), and by the CERCA Program / Generalitat de Catalunya, AGAUR (2014SGR-1434).
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