Table 2. Statistics of alignment (map to reference gene and genome) from the four libraries (exposed to salt stress for 15 days).
| Mapping Type | PT2 | PT2S | PT4 | PT4S | ||||
|---|---|---|---|---|---|---|---|---|
| map to reference gene | map to reference genome | map to reference gene | map to reference genome | map to reference gene | map to reference genome | map to reference gene | map to reference genome | |
| Total clean Reads | 43592404 | 43592404 | 52337180 | 52337180 | 33909164 | 33909164 | 45725468 | 45725468 |
| Total BasePairs | 4402832804 | 4402832804 | 5286055180 | 5286055180 | 3424825564 | 3424825564 | 4618272268 | 4618272268 |
| Total Mapped Reads | 20876540 (47.89%) |
33862719 (77.68%) |
26809022 (51.22%) |
36218429 (69.20%) |
17561062 (51.79%) |
25551420 (75.35%) |
20476884 (44.78%) |
29388276 (64.27%) |
| Perfect Match | 11357231 (26.05%) |
18314073 (42.01%) |
13019282 (24.88%) |
17207067 (32.88%) |
9174493 (27.06%) |
13318604 (39.28%) |
9426154 (20.61%) |
12806562 (28.01%) |
| Mismatch | 9519309 (21.84%) |
15548646 (35.67%) |
13789740 (26.35%) |
19011362 (36.32%) |
8386569 (24.73%) |
12232816 (36.08%) |
11050730 (24.17%) |
16581714 (36.26%) |
| Unique Match | 13702658 (31.43%) |
28050402 (64.35%) |
17735298 (33.89%) |
31131225 (59.48%) |
11585642 (34.17%) |
22045482 (65.01%) |
13482456 (29.49%) |
25295986 (55.32%) |
| Multi-position Match | 7173882 (16.46%) |
5812317 (13.33%) |
9073724 (17.34%) |
5087204 (9.72%) |
5975420 (17.62%) |
3505938 (10.34%) |
6994428 (15.30%) |
4092290 (8.95%) |
| Total Unmapped Reads | 22715862 (52.11%) |
9729685 (22.32%) |
25528156 (48.78%) |
16118751 (30.80%) |
16348100 (48.21%) |
8357744 (24.65%) |
25248582 (55.22%) |
16337192 (35.73%) |