. 2017 Oct 19;12(10):e0186440. doi: 10.1371/journal.pone.0186440

Table 3. Genes differentially regulated during growth related to lignin degradation.

Differential expression was defined as transcripts with adjusted p-values <0.05 and absolute value of log2 fold change >1 for these comparisons.

Gene ID	Annotation	Gene name	Fold change in transcripts
Gene ID	Annotation	Gene name	EE	ME	ES
Entcl_1274	6-phospho-beta-glucosidase (EC 3.2.1.86)		0.041	0.991	-1.131
Entcl_3004	6-phospho-beta-glucosidase (EC 3.2.1.86)		0.437	2.680	-0.150
Entcl_0991	6-phospho-beta-glucosidase (EC 3.2.1.86)	ascB	-0.915	1.496	-0.362
Entcl_0992	PTS system, arbutin-, cellobiose-, and salicin-specific IIBC component (EC 2.7.1.69)		-0.653	2.291	0.463
Entcl_0735	putative laccase (EC 1.10.3.2)		0.523	-0.921	1.354
Entcl_0736	Probable Fe-S oxidoreductase family 2		1.516	1.037	1.106
Entcl_0748	Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)		-0.626	1.684	0.883
Entcl_4301	Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7)		0.560	3.932	0.146
Entcl_2769	Flavoprotein wrbA		-1.502	3.638	0.700
Entcl_3180	Alkyl hydroperoxide reductase protein F (EC 1.6.4.-)		0.186	3.513	1.719
Entcl_3181	Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)		-0.010	1.468	1.126
Entcl_3797	4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, HpaG2 subunit		0.111	0.525	1.889
Entcl_3800	5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC 5.3.3.10)		0.384	3.639	1.939
Entcl_3804	Transcriptional activator of 4-hydroxyphenylacetate 3-monooxygenase operon, XylS/AraC family		1.314	2.640	-0.058
Entcl_3805	4-hydroxyphenylacetate 3-monooxygenase (EC 1.14.13.3)		0.000	1.706	-1.529
Entcl_2233	Succinate-semialdehyde dehydrogenase [NADP+]		0.340	1.543	-0.248
Entcl_0876	Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)		-1.962	0.231	0.408
Entcl_2810	Gamma-glutamyl-aminobutyraldehyde dehydrogenase (EC 1.2.1.-)		-1.292	0.011	0.519
Entcl_2233	Succinate-semialdehyde dehydrogenase [NADP+]		0.340	1.543	-0.248