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. 2017 Oct 20;12(10):e0185983. doi: 10.1371/journal.pone.0185983

Table 1. Genetic characterization of position and extent of Hsp introgressions of 83 S42ILs based on the Infinium 9k iSelect assay.

Chr. S42IL Pos. of first SNP[cM]1 Pos. of last SNP [cM] Min. size of target intr. [cM] Hsp %2 Het % Missing % No. add. intr.
1H S42IL-101 0.2 12.5 12.3 0.7 2.5 1.0 4
S42IL-102 0.2 62.3 62.1 5.9 1.6 2.3 2
S42IL-178 0.2 46.6 46.4 11.7 2.1 0.6 7
S42IL-103 32.2 53.7 21.5 4.9 0.7 1.3 4
S42IL-157 43.2 58.4 15.2 5.0 0.2 0.4 1
S42IL-104 46.3 48.8 2.5 3.2 0.2 0.3 2
S42IL-105 48.1 57.3 9.2 3.0 0.7 0.3 1
S42IL-141 58.4 80.2 21.9 2.1 0.1 0.3 1
S42IL-143 82.6 112.3 29.6 2.2 1.6 1.0 3
S42IL-182 100.8 130.8 30.0 3.8 0.6 0.3 2
S42IL-142 122.1 132.7 10.6 0.9 0.0 0.1 0
2H S42IL-106 8.9 17.6 8.7 0.8 0.0 0.2 0
S42IL-107 12.5 41.2 28.7 2.9 0.1 0.2 2
S42IL-108 12.5 59.1 46.5 7.0 0.1 0.1 1
S42IL-109 33.9 62.7 28.9 6.2 0.0 0.7 0
S42IL-144 33.9 50.1 16.2 2.1 0.0 0.4 1
S42IL-153 60.7 68.6 7.9 3.5 0.0 0.2 2
S42IL-110 89.5 97.8 8.3 2.2 0.1 0.5 3
S42IL-175 118.0 149.5 31.5 4.6 2.3 1.2 5
3H S42IL-177 23.9 62.7 38.7 10.0 2.1 0.6 7
S42IL-154 39.6 83.1 43.5 8.5 2.0 1.1 2
S42IL-111 43.1 55.2 12.1 6.3 0.9 0.3 2
S42IL-112 59.0 90.9 31.9 2.9 2.7 0.6 1
S42IL-155 59.0 83.1 24.1 6.1 1.2 0.5 3
S42IL-179 59.0 86.4 27.4 4.3 0.0 0.3 1
S42IL-181 69.9 90.9 21.0 1.0 0.8 0.6 0
S42IL-114 75.9 144.9 69.0 3.0 2.3 0.6 3
S42IL-140 86.2 148.2 62.0 4.3 0.2 1.2 0
S42IL-159 88.2 109.2 21.0 2.5 0.0 0.2 1
S42IL-158 100.3 109.8 9.6 2.0 0.6 0.1 1
S42IL-148 100.3 131.6 31.3 3.1 0.1 0.5 2
S42IL-113 120.7 142.2 21.5 1.6 0.0 0.1 0
S42IL-115 120.7 155.0 34.3 3.3 0.0 0.3 1
S42IL-160 120.9 137.9 17.0 1.2 0.4 0.8 1
S42IL-161 139.6 154.9 15.3 1.0 0.0 0.7 0
4H S42IL-116 1.1 40.0 39.0 3.5 0.0 0.1 4
S42IL-117 17.8 49.9 32.0 1.7 0.2 0.8 1
S42IL-118 35.9 54.6 18.7 3.2 0.0 0.4 1
S42IL-119 35.9 81.2 45.3 6.7 0.0 0.4 1
S42IL-120 35.9 57.5 21.6 2.5 0.4 0.5 0
S42IL-164 35.9 69.3 33.4 4.7 0.8 0.6 1
S42IL-184 40.0 51.0 11.0 0.9 0.6 0.5 0
S42IL-145 43.3 49.9 6.6 1.9 0.0 0.4 1
S42IL-162 45.7 81.2 35.6 5.7 0.0 0.7 0
S42IL-121 51.9 81.2 29.3 5.6 0.7 0.7 2
S42IL-146 55.7 81.2 25.5 1.6 1.6 0.3 0
S42IL-166 60.7 81.2 20.5 2.9 0.0 0.3 1
S42IL-123 85.6 111.3 25.8 4.7 0.0 0.6 2
S42IL-185 85.6 111.3 25.8 2.4 0.0 0.3 1
S42IL-124 110.2 115.2 5.0 1.4 0.1 0.3 2
5H S42IL-125 51.5 81.3 29.9 1.2 0.9 0.5 1
S42IL-173 51.5 98.9 47.4 2.1 0.0 0.5 0
S42IL-147 73.3 81.3 8.0 0.5 0.4 0.4 1
S42IL-126 76.2 120.3 44.2 2.5 0.0 0.6 1
S42IL-176 81.3 140.1 58.8 7.0 1.0 0.8 3
S42IL-127 138.5 162.5 24.0 3.8 0.2 0.3 2
6H S42IL-156 0.3 91.7 91.4 10.2 2.7 0.4 3
S42IL-149 30.0 51.0 21.0 2.6 0.1 0.2 3
S42IL-128 38.0 74.6 36.6 9.2 0.4 0.4 2
S42IL-152 46.2 50.8 4.6 3.1 0.2 1.0 4
S42IL-186 46.2 63.5 17.2 5.2 2.0 0.5 1
S42IL-129 47.5 79.6 32.1 8.5 0.5 0.3 0
S42IL-150 47.5 52.2 4.7 1.9 0.0 0.4 1
S42IL-130 59.9 105.2 45.3 5.4 2.2 0.4 4
S42IL-151 59.9 66.8 6.9 0.7 0.5 3.3 2
S42IL-163 78.1 99.2 21.0 1.9 0.2 0.4 1
S42IL-131 87.9 108.3 20.4 2.0 0.0 0.6 1
S42IL-132 94.9 108.3 13.4 1.4 0.0 0.4 1
S42IL-122 103.8 126.6 22.8 3.7 0.4 0.4 4
7H S42IL-187 4.1 37.6 33.5 3.5 0.4 0.8 2
S42IL-133 12.7 37.6 24.9 3.5 0.5 0.4 4
S42IL-134 37.6 68.4 30.8 2.6 0.2 1.0 1
S42IL-135 67.8 118.5 50.7 6.1 0.0 0.3 0
S42IL-167 67.8 74.4 6.7 3.4 0.4 0.4 2
S42IL-168 67.8 75.1 7.3 3.3 1.2 0.4 2
S42IL-169 67.8 81.5 13.7 4.1 1.3 0.6 3
S42IL-170 74.4 79.5 5.1 0.8 1.0 1.0 2
S42IL-171 76.6 92.1 15.5 1.8 0.5 0.6 3
S42IL-136 84.6 110.8 26.3 2.0 0.1 0.4 2
S42IL-137 86.0 127.5 41.6 5.8 0.3 0.2 4
S42IL-183 99.8 126.7 26.9 2.2 0.0 0.4 1
S42IL-138 110.8 141.1 30.2 3.3 1.6 0.1 1
S42IL-139 129.5 141.1 11.5 1.0 0.0 0.6 0

1 positions of SNPs are based on Comadran et al. 2012

2 Percentage of Hsp, heterozygous, and missing SNPs per genotype