Table 7.
Technologies | Advantages | Limitations | Reference |
---|---|---|---|
rtPCR | Faster, highly specific, allow multiplexing and permit quantification | One marker per reaction | Broeders et al., 2012; Navarro et al., 2015 |
CGE | Specificity, sensitivity, multiplexing and quantification a, higher resolution power to clearly detect PCR products from a multiplex assay | Extensive labor for primer design and optimization, specialized apparatus is required | Heide et al., 2008b; Milavec et al., 2014; Vega and Marina, 2014; Fraiture et al., 2015 |
LAMP | Required simple devices, time-efficiency, ability to withstand different PCR inhibitors | Four primers per sequence | Zhang et al., 2012; Angers-Loustau et al., 2014; Cheng et al., 2014 |
dPCR | Multiplexing, flexibility, absolute detection of target copy number, accurate estimation of target at low copy number | Relatively expensive | Hindson et al., 2011; Sanders et al., 2011; Milavec et al., 2014 |
Microarray | Miniaturization, multiplexing, high-throughput screening | Difficulties in prove designing, data processing is laborious | Pla et al., 2012; Randhawa et al., 2016 |
NGS | No prior sequence information is required, high accuracy, direct sample identification, time-efficiency | Relatively expensive, requires sophisticated devices, data analysis issues | Buermans and Den Dunnen, 2014; Randhawa et al., 2016; Willems et al., 2016 |
rtPCR, real time PCR; CGE, capillary gel electrophoresis; LAMP, loop mediated isothermal amplification; dPCR, digital PCR; NGS, next generation sequencing.