Table 2.
Predicted AphA/OpaR/ToxR box-like sequences within upstream DNA regions.
| Operon | First gene | AphA box-like sequence |
OpaR box-like sequence |
ToxR box-like sequence |
||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Position& | Sequence | Score | Position& | Sequence | Score | Position& | Sequence | Score | ||
| VP1386-1387 | VP1386 | NA | NA | NA | NA | NA | NA | R | GCAAAAAAACTAAAA | 7.1 |
| VP1388-1390 | VP1388 | NA | NA | NA | D | TGTTATGAATTAAATTAGTA | 7.5 | NA | NA | NA |
| VP1393-1406 | hcp1 | R | TAAATCACCAAATCGCTTAT | 1.84 | D | ATTGAATCAATTTATTATTA | 4.8 | NA | NA | NA |
| VP1400-1406 | VP1400 | NA | NA | NA | D | TAATTATAACTAAAATAATA | 6.82 | NA | NA | NA |
| VP1409-1407 | VP1409 | R | CTATGCCAAATGACATGCAA | 0.39 | D | AATTGATATTAATATTAGGA | 6.6 | D | TAAAATCAGAAAAAA | 6.8 |
| R | TAAATCTAATTAAAA | 6.9 | ||||||||
&, ‘D’ indicates the direct sequence, while ‘R’ the reverse one.