Table 1.
Gene names, Gene IDs, chromosomal location and normalized coverages for target flowering genes for the two sequenced accessions of B. rapa.
| Target gene | Gene ID B. napus | Gene ID B. rapa | Chromosome B. rapa | Mean normalized coverage B. napus population | Mean normalized coverage B. rapa on B. napus | Mean normalized coverage B. rapa on B. rapa | Normalized coverage genotype L58 on B. napus | Normalized coverage genotype L58 on B. rapa | Assumed nature of the CNV |
|---|---|---|---|---|---|---|---|---|---|
| Bna.VIN3.A02 | BnaA02g08140D | Bra020445 | A02 | 1,561.9 | 4,982.2 | 1,441.3 | 6,330.0 | 1,833.2 | Duplication |
| Bna.TEM1.A02 | BnaA02g14040D | Bra038346 | A02 | 1,281.5 | 2,111.5 | 702.6 | 2,637.1 | 884.7 | Duplication |
| Bna.PHYB.A03 | BnaA03g34390D | Bra001650 | A03 | 1,637.4 | 3,159.4 | 1,076.7 | 3,986.9 | 659.3 | Deletion |
| Bna.SVP.A04 | BnaA04g12990D | Bra030228 | A04 | 1,196.7 | 2,485.7 | 960.0 | 3,246.9 | 1,238.4 | Duplication |
| Bna.CRY2.A08 | BnaA08g27870D | Bra030568 | A08 | 1,195.9 | 1,769.3 | 950.9 | 1,788.6 | 712.5 | Deletion |
| Bna.SUF4.A09 | BnaA09g25530D | Bra023153 | A09 | 1,467.6 | 2,513.5 | 1,249.9 | 2,506.9 | 1,512.6 | Duplication |
| Bna.GA3ox.A09 | BnaA09g57140D | Bra026757 | A09 | 1,675.6 | 1,114.2 | 594.5 | 720.1 | 425.4 | Deletion |
| Bna.CO-li.A10 | BnaA10g18420D | Bra008668 | A10 | 2,248.3 | 3,936.3 | 1,398.6 | 4,418.0 | 994.0 | Deletion |
| Bna.SUF4.Ann | BnaAnng11220D | Bra039880 | A08 | 1,050.3 | 2,338.2 | 1,042.0 | 1,600.3 | 1,261.8 | Duplication |
| Bna.CO.Ann | BnaAnng39160D | Bra021464 | A01 | 795.4 | 2,212.1 | 1,009.1 | 3201.7 | 1,304.3 | Duplication |
| Target gene | Gene ID B. napus | Gene ID B. rapa | Chromosome B. rapa | Mean normalized coverage B. napus population | Mean normalized coverage B. rapa on B. napus | Mean normalized coverage B. rapa on B. rapa | Normalized coverage genotype R-0-18 on B. napus | Normalized coverage genotype R-0-18 on B. rapa | Assumed nature of the CNV |
| Bna.PHYA.A06 | BnaA06g05470D | Bra020013 | A06 | 1,104.8 | 1,423.0 | 826.4 | 1,521.4 | 1,077.1 | Duplication |
| Bna.ZTL.A07 | BnaA07g01230D | Bra038830 | A07 | 1,265.0 | 3,121.8 | 1,343.2 | 2,839.7 | 1,627.4 | Duplication |
| Bna.EFS.A07 | BnaA07g33460D | Bra015678 | A07 | 1,171.4 | 2,417.1 | 945.9 | 3,089.6 | 1,179.9 | Duplication |
| Bna.EFS.A07 | BnaA07g33460D | Bra015678 | A07 | 1,171.4 | 2,417.1 | 945.9 | 3,089.6 | 1,179.9 | Duplication |
| Bna.ELF7.A10 | BnaA10g27050D | Bra009582 | A10 | 1,094.2 | 2,348.5 | 1,120.3 | 2,609.5 | 1,386.0 | Duplication |
| Bna.TFL1.Ann | BnaAnng00810D | Bra028815 | A02 | 1,576.4 | 2,931.8 | 1,266.9 | 3,435.0 | 1,542.4 | Duplication |
| Bna.GRP7.Ann | Bra031210 | A09 | 322.3 | 670.1 | 510.3 | 594.5 | 700.5 | Duplication |