Table 2.
Gene names, Gene IDs, chromosomal location and normalized coverages for target flowering genes for the two sequenced lines of B. oleracea.
| Target gene | Gene ID B. napus | Gene ID B.oleracea | Chromosome B.oleracea | Mean normalized coverage B. napus population | Mean normalized coverage B. oleracea on B. napus | Mean normalized coverage B. oleracea on B. oleracea | Normalized coverage genotype BRA1398 on B. napus | Normalized coverage genotype BRA1398 on B.oleracea | Assumed nature of the CNV |
|---|---|---|---|---|---|---|---|---|---|
| Bna.FT.C02 | BnaC02g23820D | Bo01129s030 | Scaffold01129 | 95.2 | 69.3 | 51.4 | 0.5 | 0.6 | Deletion |
| Bna.FRI.C03 | BnaC03g16130D | NA | C3 | 1,092.3 | 1,965.8 | NA | 1,721.2 | NA | Duplication |
| Bna.FT.C06 | BnaC06g27090D | Bo6g099320 | C6 | 490.3 | 888.6 | 1209.0 | 627.5 | 1,514.5 | Duplication |
| Bna.EFS.C06 | BnaC06g38010D | Bo6g121240 | C6 | 1,379.9 | 2,242.1 | 1,481.9 | 3,276.3 | 2,014.1 | Duplication |
| Bna.SUF4.C08 | BnaC08g09340D | Bo2g121020 | C2 | 1,321.7 | 4,003.0 | 2,995.4 | 5,437.6 | 4,023.6 | Duplication |
| Bna.PHYB.C08 | BnaC08g10540D | Bo8g043460 | C8 | 76.8 | 45.9 | 27.6 | 0.3 | 0.2 | Deletion |
| Target gene | Gene ID B. napus | Gene ID B.oleracea | Chromosome B.oleracea | Mean normalized coverage B. napus population | Mean normalized coverage B. oleracea on B. napus | Mean normalized coverage B. oleracea on B. oleracea | Normalized coverage genotype Kashirka on B. napus | Normalized coverage genotype Kashirka on B. oleracea | Assumed nature of the CNV |
| Bna.AP1.C02 | BnaC02g44500D | Bo2g062650 | C2 | 1,635.1 | 1,891.5 | 2,082.4 | 3,040.8 | 3,126.3 | Duplication |
| Bna.TFL1.C03 | BnaC03g47080D | Bo3g040460 | C3 | 904.5 | 1,028.9 | 752.8 | 1,522.7 | 1,055.7 | Duplication |
| Bna.CAL.C03 | BnaC03g56640D | Bo00825s090 | Scaffold00825 | 822.7 | 842.2 | 1,237.0 | 1,206.9 | 1,718.7 | Duplication |
| Bna.TFL1.C04 | BnaC04g16750D | Bo4g074330 | C4 | 1,290.8 | 2,202.5 | 1,403.5 | 1,850.2 | 1,742.2 | Duplication |
| Bna.SRR1.C09 | BnaC09g34850D | Bo9g139490 | C9 | 1,087.5 | 1,649.7 | 1,324.3 | 1,243.6 | 1,669.0 | Duplication |
| Bna.CO.C09 | BnaC09g41990D | Bo9g163730 | C9 | 1,466.0 | 1,103.9 | 1,004.9 | 3.2 | 2.7 | Deletion |
| Bna.FLC.C09 | BnaC09g46540D | Bo9g173400 | C9 | 1,031.5 | 4,037.8 | 1,523.2 | 4,302.0 | 1,885.6 | Duplication |
| Bna.VRN2.Cnn | BnaCnng45490D | Bo5g078770 | C5 | 207.0 | 253.1 | 155.1 | 337.3 | 227.1 | Duplication |