Table S2.
Gene | Fold change | P value | Gene function |
esxA | 7.57 | 3 × 10−13 | Type VII secretion (5) |
esaA | 3.86 | 4 × 10−12 | |
essA | 4.32 | 9 × 10−11 | |
esaB | 3.53 | 2 × 10−6 | |
essB | 3.84 | 5 × 10−9 | |
essC | 6.96 | 3 × 10−13 | |
esxC | 6.73 | 2 × 10−10 | |
esxB | 7.01 | 2 × 10−11 | |
esaE | 7.62 | 5 × 10−12 | |
esxD | 8.46 | 1 × 10−11 | |
esaD | 4.14 | 2 × 10−11 | |
esaG | 2.22 | 1 × 10−8 | |
vraR | 1.10 | 0.19 | Two-component system, cell wall stress response (20) |
vraS | 1.07 | 0.46 | |
groEL | 0.68 | 1 × 10−5 | Chaperonins, cell wall stress response (20) |
groES | 0.48 | 2 × 10−7 | |
asp23 | 1.07 | 0.24 | Alkaline/cell wall stress response (39) |
dnaJ | 0.98 | 0.60 | Chaperonins, cell wall stress response (20) |
dnaK | 0.92 | 0.09 | |
grpE | 0.77 | 2 × 10−4 | |
clpP | 0.99 | 0.9 | Proteostasis, stress tolerance (40) |