Table 1. Information on Eurasian A/goose/Guangdong/1/1996 lineage (H5N1) virus isolates used in this study.
| Isolate | Abbreviation | Country | Host/source | Genetic clade | Accession nos.* |
|---|---|---|---|---|---|
| A/Vietnam/1203/2004 | VN/04 | Vietnam | Human | 1 | HM006756–63 |
| A/chicken/Vietnam/NCVD-878/2011 | VN/878/11 | Vietnam | Poultry | 1.1 | Not available |
| A/chicken/West Java-Subang/29/2007 | WJ/07 | West Java | Poultry | 2.1.3 | EPI533441† |
| A/whooper swan/Mongolia/244/2005 |
Mong/05 |
Mongolia |
Water fowl |
2.2 |
GU186700–07 |
| A/chicken/Egypt/102d/2010 | Eg/10 | Egypt | Poultry | 2.2.1 | HQ198270.1 |
| HQ908480.1 | |||||
| KR732432.1 | |||||
| KR732440.1 | |||||
| KR732445.1 | |||||
| KR732492.1 | |||||
|
|
|
|
|
|
KR732530.1 |
| A/Egypt/N6658/2011 |
Eg/11 |
Egypt |
Human |
2.2.1 |
EPI372860–67† |
| A/chicken/Vietnam/NCVD-675/2011 | VN/675/11 | Vietnam | Poultry | 2.3.2.1 | KR732403 |
| KR732406 | |||||
| KR732415 | |||||
| KR732468 | |||||
| KR732481 | |||||
| KR732506 | |||||
| KR732521 | |||||
|
|
|
|
|
|
KR732536 |
| A/chicken/Vietnam/093/2008 | VN/08 | Vietnam | Poultry | 7.2 | FJ538949.1 |
| FJ538950.1 | |||||
| FJ842480.1 |
*Accession numbers from GenBank except as indicated. Accession numbers represent sequences from all available segments of influenza A virus. †Accession number from GISAID (http://platform.gisaid.org).