Table 4. The differentially expressed genes (DEGs) number and pathways associated with metabolism and signaling highly represented under salt stress.
| Pathway ID | The number of differentially expressed genes | The number of backgroud genes |
Pathway terms | |||
|---|---|---|---|---|---|---|
| NYSL vs. NYCL | YYSL vs. YYCL | NYSR vs. NYCR | YYSR vs. YYCR | |||
| ko01210 | 9 | 11 | 23 | 42 | 164 | 2-Oxocarboxylic acid metabolism |
| ko00520 | 19 | 21 | 29 | 60 | 213 | Amino sugar and nucleotide sugar metabolism |
| ko00330 | 11 | 14 | 34 | 51 | 179 | Arginine and proline metabolism |
| ko01230 | 50 | 39 | 67 | 130 | 570 | Biosynthesis of amino acids |
| ko00710 | 18 | 19 | 31 | 42 | 236 | Carbon fixation in photosynthetic organisms |
| ko01200 | 45 | 39 | 83 | 136 | 676 | Carbon metabolism |
| ko00260 | 16 | 15 | 31 | 44 | 168 | Glycine, serine and threonine metabolism |
| ko00040 | 10 | 13 | 24 | 45 | 156 | Pentose and glucuronate interconversions |
| ko00030 | 8 | 9 | 17 | 37 | 135 | Pentose phosphate pathway |
| ko00360 | 15 | 22 | 33 | 92 | 175 | Phenylalanine metabolism |
| ko00940 | 24 | 33 | 40 | 125 | 240 | Phenylpropanoid biosynthesis |
| ko04075 | 28 | 57 | 49 | 125 | 288 | Plant hormone signal transduction |
| ko04146 | 14 | 15 | 63 | 68 | 262 | Peroxisome |
| ko00020 | - | - | 44 | 62 | 267 | Citrate cycle (TCA cycle) |
| ko00190 | - | - | 59 | 57 | 738 | Oxidative phosphorylation |
| ko04010 | - | - | 47 | 49 | 292 | MAPK signaling pathway |
| ko04020 | - | - | 45 | 38 | 213 | Calcium signaling pathway |
| ko04120 | - | - | 43 | 50 | 322 | Ubiquitin mediated proteolysis |
| ko00250 | - | - | 14 | 25 | 98 | Alanine, aspartate and glutamate metabolism |
| ko00680 | 10 | 9 | - | - | 115 | Methane metabolism |
| ko00073 | 4 | 4 | - | - | 26 | Cutin, suberine and wax biosynthesis |