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. 2017 Oct 11;13(10):e1006672. doi: 10.1371/journal.ppat.1006672

Table 1. The Top30 most upregulated genes in ΔZtGT2 vs WT fungus growing in liquid medium.

*Gene_id new Ensembl **Original Id Ensembl FPKM WT FPKM ΔZtGT2 Log2 fold change ΔZtGT2/WT Blastp annotation (NCBI) Signal peptide? Transmembrane? log2 fold WT 48h plant / culture
ZtritIPO323_04t13800 Mycgr3G47776 2.38361 187.623 6.29855 GPR1 FUN34 -class plasma membrane No YES 3.69719
ZtritIPO323_04t06606 Mycgr3G103427 36.5046 2328.37 5.9951 Tandem Repeat Protein 4 (TRP4)*** Yes No 4.56836
ZtritIPO323_04t08955 Mycgr3G109137 50.7599 2372.23 5.54641 hypothetical protein MYCGRDRAFT_109137 Yes No 4.48632
ZtritIPO323_04t03143 Mycgr3G111221 21.2326 742.174 5.12741 3xLysM domain effector (3LysM) Yes No 5.30617
ZtritIPO323_04t10723 Mycgr3G104794 327.83 10093.8 4.94438 hypothetical protein MYCGRDRAFT_104794 Yes No 1.90893
ZtritIPO323_04t01868 Mycgr3G89984 9.07987 277.305 4.93266 hypothetical protein MYCGRDRAFT_89984 No YES 2.02453
ZtritIPO323_04t07933 Mycgr3G91855 5.51628 168.164 4.93003 aspergillopepsin-2 precursor like Yes No No change
ZtritIPO323_04t01956 Mycgr3G67250 4.68437 124.825 4.73591 peroxidase catalase like Yes No 1.71448
ZtritIPO323_04t00231 Mycgr3G34306 5.01835 132.068 4.71792 Aspartic protease pep1 like Yes No 3.47866
ZtritIPO323_04t13637 Mycgr3G95831 20.0937 519.83 4.69323 hypothetical protein MYCGRDRAFT_95831 Yes No No change
ZtritIPO323_04t04294 Mycgr3G111636 235.826 5976.16 4.66342 Ecp2-3 effector homologue Yes No 1.9105
ZtritIPO323_04t08501 Mycgr3G104000 38.9405 950.309 4.60905 hypothetical protein MYCGRDRAFT_104000 Yes No 6.39787
ZtritIPO323_04t10384 Mycgr3G72646 6.27375 148.704 4.56697 alpha 1,3 glucan synthase No YES 1.76247
ZtritIPO323_04t11777 Mycgr3G110220 32.942 745.202 4.49963 hypothetical protein MYCGRDRAFT_110220 Yes No 2.4987
ZtritIPO323_04t04149 Mycgr3G77689 2.1705 43.3503 4.31994 carboxypeptidase S1 Yes No 5.99527
ZtritIPO323_04t03806 Mycgr3G97031 19.0535 376.75 4.30548 hypothetical protein MYCGRDRAFT_97031 Yes No No change
ZtritIPO323_04t09707 none 28.0532 550.981 4.29576 none Yes No No change
ZtritIPO323_04t13185 Mycgr3G48129 91.2925 1728.88 4.2432 Cerato-platanin / hydrophobin Yes No No change
ZtritIPO323_04t11297 Mycgr3G12051 1.65444 28.5554 4.10935 galactose oxidase Yes No 4.3809
ZtritIPO323_04t09426 Mycgr3G71659 4.53293 77.3318 4.09255 NAD(P)-binding Rossmann-fold containing No No No change
ZtritIPO323_04t07171 Mycgr3G108399 38.5037 644.32 4.06471 hypothetical protein MYCGRDRAFT_108399 No No No change
ZtritIPO323_04t03262 Mycgr3G96651 1.87684 31.0977 4.05043 hypothetical protein MYCGRDRAFT_96651 No No No change
ZtritIPO323_04t04165 none 9.77584 156.07 3.99683 hypothetical protein TI39_contig4278g00011 Yes No 5.34383
ZtritIPO323_04t00584 none 77.6554 1221.01 3.97484 hypothetical protein TI39_contig279g00027 No No No change
ZtritIPO323_04t09555 Mycgr3G92998 25.6961 402.709 3.97012 hypothetical protein MYCGRDRAFT_92998 Yes No 1.87831
ZtritIPO323_04t06766 Mycgr3G69117 4.18014 64.4432 3.9464 MFS monosaccharide transporter like No YES No change
ZtritIPO323_04t11928 Mycgr3G19274 257.455 3908.59 3.92425 major allergen alt a1 Yes No No change
ZtritIPO323_04t13136 Mycgr3G46937 8.05712 121.448 3.91393 major facilitator superfamily transporter like No YES No change
ZtritIPO323_04t12624 Mycgr3G105419 276.522 4164.69 3.91274 small threonine-rich Yes No -1.58721
ZtritIPO323_04t13161 Mycgr3G101121 2.95145 42.827 3.85902 general substrate transporter No YES 5.83776

*- sequences available from https://doi.org/10.6084/m9.figshare.4753708.v1 [42].

*** previously described in [43].