Table 5.
The pathways and key proteins and metabolites for breast muscle in Cobb chickensa
| PATHWAY | ED 12 - ED 17 | ED 17 – D 1 | D 1 - D 14 |
|---|---|---|---|
| FXR/RXR Activation, LXR/RXR Activation | APOB, SERPINA1, COL3A1, FGA | LYZ, APOA1, APOH, androsterone | ALB, TF, APOH, GC, androsterone |
| Calcium Signaling | MYH2, TNNI2, acetylcholine, TPM1, CASQ2, ACTA1 | TNNI2, TNNC2, TNNC1, TPM1, ATP2A2, CASQ2 | MYH2, acetylcholine, TNNC1 |
| Actin Cytoskeleton Signaling | TLN2, MYH2, MYL10, acetylcholine, TLN1, ACTA1 | FN1, FLNA, ACTN2 | MYH2, acetylcholine, ARPC3, GSN |
| Glycolysis I/ Gluconeogenesis I | ENO1, MDH2 | PGAM1, MDH1, MDH2 | PGK1, GPI, PGAM1, GAPDH, FBP2 |
| TCA Cycle II (Eukaryotic) | ACO2, DLD, FH, MDH2 | ACO2, MDH1, FH, MDH2, OGDH | – |
| Oxidative Phosphorylation/ Mitochondrial Dysfunction | NDUFS1, ATP5B, UQCRC2, ACO2, VDAC1, palmitic acid, VDAC2 | ATP5B, ACO2, NDUFB6, OGDH, palmitic acid, ATP5F1, VDAC2 | |
| Hepatic Fibrosis / Hepatic Stellate Cell Activation | MYH2, COL6A1, COL6A2, COL20A1, COL3A1 | – | MYH2, COL4A1, COL12A1 |
| Acute Phase Response Signaling | – | FN1, APOA1, APOH | ALB, TF, APOH |
| Protein Kinase A Signaling | – | prostaglandin E2, TNNI2, FLNA, PDIA3, PYGB | prostaglandin E2, PHKB, MYH2, YWHAE, YWHAZ, PYGB |
| Clathrin-mediated Endocytosis Signaling | – | SH3GL1, LYZ, APOA1 | ALB, TF, ARPC3 |
a-means no differentially abundant proteins and metabolites enriched