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. 2017 Oct 23;18:814. doi: 10.1186/s12864-017-4214-4

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© The Author(s). 2017

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 2 — Read alignment statistics and counting results for individual replicates of aerial (AE) and root (RT) samples. a Percentages of reads mapping to annotated gene loci or intergenic regions and unmapped reads. b Percentages of reads mapped to lncRNA loci, mitochondrial loci, retrotransposons, loci encoding putative/unknown proteins, dubious ORFs and other nuclear loci. c Mean percentages of aerial and root sample reads mapped to different feature types. d Sample similarity map generated in R using the Bioconductor package; intensity of color is proportional to similarity, measured by Poisson distance