Table 4. Spearman correlation of sequenced NCI-60 cell lines to published miRNA microarray expression levels.
|
Broad |
Sokilde
et al. |
|||||
|---|---|---|---|---|---|---|
| Cell line | r | 95% confidence interval | p (two-tailed) | r | 95% confidence interval | p (two-tailed) |
| 786-0 | 0.7064 | 0.651–0.7543 | <0.0001 | 0.3252 | 0.1976–0.4421 | <0.0001 |
| A598 | n/a | n/a | n/a | 0.2644 | 0.1327–0.3869 | <0.0001 |
| A549 | 0.6809 | 0.6218–0.7324 | <0.0001 | 0.1815 | 0.04619–0.3103 | 0.0071 |
| ACHN | 0.6959 | 0.6389–0.7453 | <0.0001 | 0.27 | 0.1387–0.392 | <0.0001 |
| BT-549 | n/a | n/a | n/a | 0.3202 | 0.1922–0.4376 | <0.0001 |
| CAKI-1 | 0.7004 | 0.6441–0.7492 | <0.0001 | 0.1604 | 0.02453–0.2905 | 0.0175 |
| CCRF-CEM | n/a | n/a | n/a | 0.1251 | -0.01157–0.2571 | 0.0647 |
| COLO-205 | 0.6766 | 0.6169–0.7287 | <0.0001 | 0.2974 | 0.1677–0.4169 | <0.0001 |
| DU-145 | 0.726 | 0.6735–0.7711 | <0.0001 | 0.3293 | 0.2019–0.4457 | <0.0001 |
| EKVX | 0.6248 | 0.558–0.6836 | <0.0001 | 0.2634 | 0.1317–0.386 | <0.0001 |
| HCC2998 | 0.6512 | 0.5879–0.7066 | <0.0001 | 0.3391 | 0.2125–0.4545 | <0.0001 |
| HCT-116 | 0.7019 | 0.6458–0.7505 | <0.0001 | 0.3393 | 0.2127–0.4547 | <0.0001 |
| HCT-15 | 0.7193 | 0.6658–0.7654 | <0.0001 | 0.2704 | 0.1391–0.3924 | <0.0001 |
| HL-60 | 0.6358 | 0.5704–0.6932 | <0.0001 | 0.2533 | 0.1211–0.3767 | 0.0002 |
| HOP-62 | 0.6899 | 0.632–0.7401 | <0.0001 | 0.2566 | 0.1245–0.3798 | 0.0001 |
| HOP-92 | 0.6576 | 0.5951–0.7121 | <0.0001 | 0.2288 | 0.09537–0.3542 | 0.0006 |
| HS-578-T | 0.6283 | 0.5619–0.6867 | <0.0001 | 0.2857 | 0.1554–0.4063 | <0.0001 |
| HT-29 | 0.6956 | 0.6386–0.7451 | <0.0001 | 0.2875 | 0.1572–0.4079 | <0.0001 |
| IGR-OV1 | 0.6986 | 0.642–0.7476 | <0.0001 | 0.3065 | 0.1774–0.4251 | <0.0001 |
| K-562 | n/a | n/a | n/a | 0.2657 | 0.1341–0.3881 | <0.0001 |
| KM12 | n/a | n/a | n/a | 0.3265 | 0.1989–0.4432 | <0.0001 |
| LOX-IMVI | 0.6699 | 0.6091–0.7228 | <0.0001 | 0.2637 | 0.132–0.3862 | <0.0001 |
| M14 | 0.6938 | 0.6365–0.7435 | <0.0001 | 0.2585 | 0.1265–0.3815 | 0.0001 |
| MALME-3M | 0.5848 | 0.513–0.6485 | <0.0001 | 0.3069 | 0.1779–0.4256 | <0.0001 |
| MCF-7 | 0.7235 | 0.6707–0.769 | <0.0001 | 0.3271 | 0.1996–0.4438 | <0.0001 |
| MDA-MB-231 | 0.7125 | 0.658–0.7596 | <0.0001 | 0.1837 | 0.04847–0.3123 | 0.0064 |
| MDA-MB-435 | 0.7081 | 0.653–0.7558 | <0.0001 | 0.2907 | 0.1607–0.4109 | <0.0001 |
| MOLT-4 | 0.7034 | 0.6476–0.7518 | <0.0001 | 0.2809 | 0.1502–0.402 | <0.0001 |
| NCI/ADR-RES | n/a | n/a | n/a | 0.3046 | 0.1754–0.4234 | <0.0001 |
| NCI-H226 | 0.6901 | 0.6323–0.7403 | <0.0001 | 0.3613 | 0.2365–0.4743 | <0.0001 |
| NCI-H23 | 0.631 | 0.565–0.689 | <0.0001 | 0.2649 | 0.1332–0.3873 | <0.0001 |
| NCI-H322M | n/a | n/a | n/a | 0.3624 | 0.2378–0.4754 | <0.0001 |
| NCI-H460 | 0.6395 | 0.5746–0.6964 | <0.0001 | 0.2794 | 0.1486–0.4006 | <0.0001 |
| NCI-H522 | 0.7047 | 0.649–0.7529 | <0.0001 | 0.2856 | 0.1552–0.4062 | <0.0001 |
| OVCAR-3 | 0.6951 | 0.638–0.7446 | <0.0001 | 0.3629 | 0.2383–0.4758 | <0.0001 |
| OVCAR-4 | 0.6731 | 0.6128–0.7256 | <0.0001 | 0.3422 | 0.2158–0.4573 | <0.0001 |
| OVCAR-5 | 0.7101 | 0.6552–0.7575 | <0.0001 | 0.2952 | 0.1655–0.415 | <0.0001 |
| OVCAR-8 | 0.6613 | 0.5994–0.7154 | <0.0001 | 0.3407 | 0.2142–0.456 | <0.0001 |
| PC-3 | 0.6373 | 0.5721–0.6945 | <0.0001 | 0.2893 | 0.1592–0.4096 | <0.0001 |
| RPMI-8226 | 0.6704 | 0.6098–0.7233 | <0.0001 | 0.2641 | 0.1325–0.3866 | <0.0001 |
| RXF393 | 0.5656 | 0.4915–0.6316 | <0.0001 | 0.3085 | 0.1797–0.427 | <0.0001 |
| SF-268 | 0.6788 | 0.6193–0.7305 | <0.0001 | 0.2812 | 0.1505–0.4022 | <0.0001 |
| SF-295 | 0.6831 | 0.6243–0.7343 | <0.0001 | 0.2986 | 0.1691–0.418 | <0.0001 |
| SF-539 | 0.6623 | 0.6005–0.7162 | <0.0001 | 0.3037 | 0.1745–0.4227 | <0.0001 |
| SK-MEL-2 | 0.6294 | 0.5632–0.6876 | <0.0001 | 0.2851 | 0.1546–0.4057 | <0.0001 |
| SK-MEL-28 | 0.6765 | 0.6167–0.7286 | <0.0001 | 0.2867 | 0.1564–0.4072 | <0.0001 |
| SK-MEL-5 | 0.6095 | 0.5408–0.6702 | <0.0001 | 0.3681 | 0.2439–0.4804 | <0.0001 |
| SK-OV-3 | 0.658 | 0.5956–0.7125 | <0.0001 | 0.2613 | 0.1295–0.384 | <0.0001 |
| SN12C | 0.7182 | 0.6645–0.7644 | <0.0001 | 0.321 | 0.193–0.4382 | <0.0001 |
| SNB-19 | 0.6126 | 0.5441–0.6729 | <0.0001 | 0.2332 | 0.09998–0.3583 | 0.0005 |
| SNB-75 | n/a | n/a | n/a | 0.294 | 0.1642–0.4139 | <0.0001 |
| SR | n/a | n/a | n/a | 0.1599 | 0.02397–0.29 | 0.0179 |
| SW-620 | 0.7124 | 0.6578–0.7595 | <0.0001 | 0.3805 | 0.2575–0.4915 | <0.0001 |
| T-47D | 0.6827 | 0.6238–0.7339 | <0.0001 | 0.3928 | 0.2709–0.5023 | <0.0001 |
| TK-10 | 0.7137 | 0.6593–0.7606 | <0.0001 | 0.1981 | 0.06341–0.3258 | 0.0032 |
| U-251 | 0.6242 | 0.5573–0.6831 | <0.0001 | 0.2862 | 0.1558–0.4067 | <0.0001 |
| UACC-257 | 0.4873 | 0.4049–0.5618 | <0.0001 | 0.2332 | 0.09994–0.3583 | 0.0005 |
| UACC-62 | 0.676 | 0.6161–0.7281 | <0.0001 | 0.3074 | 0.1785–0.426 | <0.0001 |
| UO-31 | n/a | n/a | n/a | 0.2975 | 0.1672–0.4175 | <0.0001 |