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. Author manuscript; available in PMC: 2018 Sep 1.
Published in final edited form as: Int J Syst Evol Microbiol. 2017 Aug 22;67(9):3261–3267. doi: 10.1099/ijsem.0.002096

Table 4.

Comparison of the presence and absence of selected genes.

      Genes putatively encoding P. sphagniphilus sp. nov. P. wuianus P. asymbioticus P. duraquae P. sinensis P. yangtzensis
MWH-Weng1-1T QLW-P1FAT50C-4T QLW-P1DMWA-1T MWH-MoK4T MWH-HuW1T MWH-JaK3T
Inorganic nutrients
      ABC-type Fe3+ transport system - - - + + +
      feoAB genes (uptake of Fe2+) + + + - + +
      ABC-type Nitrate/Nitrite/Cyanate transporter + + + - - +
      Nitrate reductase (assimilatory) + + + - - +
      Nitrite reductase (assimilatory) + + + - - +
      Cyanate lyase (releases NH3 and CO2 from cyanate) + + + - - +
      Urease and ABC-type urease transporter + + + - - -
Oxidative phosphorylation/Energy metabolism
      Cytochrome bd-I terminal oxidase (CydAB) + + + - + -
      Fumarate reductase + + - + - +
      Carbon monoxide dehydrogenase + + - 2 clusters - +
      Acetate permease actP + - + - - -
Anoxygenic photosynthesis
      Photosynthesis gene cluster - + - + - -
Motility
      Flagella genes - - - + - -
Oxidative stress
      Catalase 1 gene - 2 genes - - 1 gene
Other
      Cellulose synthase operon protein C - - + - - -
      Cellulose synthase catalytic subunit [UDP-forming] - - + - - -