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. Author manuscript; available in PMC: 2017 Oct 24.
Published in final edited form as: J Neurovirol. 2016 Feb 3;22(3):400–402. doi: 10.1007/s13365-016-0425-8

Table 1.

Primer and probe sequences

Gene name Forward sequence (5′-3′) Reverse sequence (5′-3′) Probe sequence (5′-3′)
Smart GAPdH CACATGGCCTCCAAGGAGTAA TGAGGGTCTCTCTCTTCCTCTTGT VIC/CTGGACCACCAGCCCCAGCAAG
VZV ORF 68 GTACATTTGGAACATGCGCG TCCACATATGAAACTCAGCCC FAM/AAAACAAGAAACCCTACGCCCGC
Unique HSV-1a TGGTATTGCCCAACACTTTCC GCGCCAGGCACACACAT FAM/CGTGTCGCGTGTGGT/BHQ
a

Amplifies the non-coding region of the HSV-1 genome between UL42 and UL43