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. Author manuscript; available in PMC: 2018 Jan 17.
Published in final edited form as: Biochemistry. 2017 Oct 2;56(41):5550–5559. doi: 10.1021/acs.biochem.7b00869

Table 3.

Rates obtained from modeling the FRET data using KinTek Global Explorer

Step Reactiona Constantb Non-extendable DNA Extendable DNA
WT E288K WT E288K
DNA Binding E + D → ED KD (DNA)# 5 19 5 19
ED → E + D

dNTP Binding ED → N + EDN Kd(dNTP)* 3.6±0.5 5.8±1.2 3.6±0.5 5.8±1.2
EDN → ED + N

Fingers Closing EDN → END k+3 129±18 114±8 84±44 90±21
END → EDN k−3 84±9 9±2 148±27 9±3

Non-covalent Step END → NDE k+4 18±1 6.5±0.3 17±13 10±2
NDE → END k−4 0.59±0.05 0.26±0.03 1.4±2.0 41±13

Polymer-ization NDE → EP k+5 10.9±0.3 22.6±1.1
EP → NDE k−5 0 0

Post Chemistry EP → E + P k+6 0.45±0.11 0.3±0.2
E + P → EP k−6 0.02±0.07 0.03±0.2
a

Reaction as modeled in KinTek Explorer. E represents enzyme, D represents DNA substrate, N represents nucleotide, and P represents product.

b

Rate constants all have units of s−1 exceptK has units of μM−1s−1. # has units of nM and * has units of μM.