Table 2.

Summary of structural rearrangements relative to the order of markers along the A. tauschii pseudomolecules, and the presence of these rearrangements on the consensus genetic maps of Wang et al. (2014) and Maccaferri et al. (2015).

Rearrangement	Chromosome arm	SNP marker	cM	Length (bp)	Traversed distance (bp)	Present in Maccaferri et al. (2015)	Present in Wang et al. (2014)
Intrachromosomal translocation	1AL	wsnp_BE585780A_Ta_2_1	37.77	6,145,185	1,546,021	Yes
		Tdurum_contig81558_113	37.77
Intrachromosomal translocation	1AL	BS00022261_51	62.94	381,169	776,520	Yes
		GENE-0262_431	63.05
Intrachromosomal translocation	1BS	GENE-0427_115	29.16	1,565,889	2,092,637	No	Yes
		Kukri_c60285_505	29.16
Intrachromosomal translocation	1BL	Tdurum_contig13405_483	35.28	3,165,279	4,200,142	No	Yes
		IAAV6919	35.76
Intrachromosomal translocation	2AS	BobWhite_c2532_966	62.11	6,203,600	6,640,539	Yes
		RAC875_rep_c74200_1415	62.11
Intrachromosomal translocation	3AS	Kukri_rep_c96809_352	4.26	532,098	903,789	Yes
		wsnp_Ex_c2573_4788116	4.26
Intrachromosomal translocation	3AS	Excalibur_c74666_291	4.50	384,672	1,774,336	Yes
		BobWhite_c23392_496	4.50
Intrachromosomal translocation	6AS	D_GB5Y7FA01EBNCV_218	35.60	3,353,890	4,963,447	No	Yes
		BobWhite_c5782_825	35.71
Intrachromosomal translocation	7BS	Tdurum_contig68742_597	46.06	4,668,693	14,089,439	Yes
		BS00095819_51	46.06
Interchromosomal translocation	7BL	Excalibur_rep_c69070_180	53.53	3,369,543	63,280,261	Yes
		wsnp_Ex_c4213_7609689	53.53
Paracentric inversion Inv(1)	3AS	BS00022798_51	3.90	2,282,223	NA	Yes	Yes
		Excalibur_c74666_291	4.50
Paracentric inversion Inv(2)	7AL	wsnp_Ex_c29371_38412298	69.73	26,801,048	NA	Yes
		wsnp_Ex_c558_1105911	70.44
Paracentric inversion Inv(3)	7AL	BS00048915_51	70.80	27,053,119	NA	Yes
		BS00065250_51	72.83
Paracentric inversion Inv(4)	7BS	BS00022562_51	0.00	414,765	NA	Yes
		Excalibur_c37696_192	0.23
Reciprocal translocation	3B centromere	TA004110-0731	47.55	NA	1,392,493	No	No
	6B centromere	RAC875_c77_1176	46.82