Table 5. Probe and primer sequences for 4 SNPs used for genotyping.
| SNP ID | Gene | Chromosome | Functional consequence | Primer/probe sequences |
|---|---|---|---|---|
| rs2228527 |
ERCC6 Arg1213Gly |
10:49470323 | Missense | 5′-AAAGCCTAAGAACTCTAAGCATTGC[A/G] GAGACGCCAAGTTTGAAGGAACTCG-3′ |
| rs2228529 |
ERCC6 Gln1413Arg |
10:49459059 | Missense | 5′- TTAGAAAGTGAAAGCGGGCACCTGC[A/G] GGAAGCTTCTGCCCTGCTGCCCACC-3′ |
| rs4134822 |
XAB2/XPA Val126Ile |
19:7627389 | Missense | 5′- CCAGTTCCTCATGGACCAGGGGCGC[A/G] TCACACACACCCGCCGCACCTTCGA-3′ |
| rs1799793 |
XPD Asp312Asn |
19:45364001 | Missense, nc transcript variant | F: 5′-CAGCTCATCTCTCCGCAGGATCAA-3′ R: 5′-GTCGGGGCTCACCCTGCAGCACTTCCT-3′ |