. 2017 Oct 24;12(10):e0186788. doi: 10.1371/journal.pone.0186788

Table 4. Distribution of SSR sequences in the cp genomes of Lilium species.

SSR type	L. am	L.ca	L.la	L.ph	L.ha	L.lo	L.su	L.fa	L.di
AT	-	-	-	-	-	-	-	6	6	LSC(trnK-UUU)^*
AT	6	6	6	7	6	6	6	6	-	LSC(trnS-GCU- trnG-UCC)^***
AT	-	-	-	-	-	6	-	-	-	LSC(trnS-GCU- trnG-UCC)^***
AT	-	-	-	-	-	-	6	-	6	LSC(rpoB-trnC-GCA)^***
AT	-	-	-	-	-	6	6	7	6	LSC(trnL-UAA)^*
AT	-	-	-	-	-	6	-	-	-	LSC(petB-petD)^***
AT	10	10	8	-	8	-	-	-	-	LSC(trnL-UAA)^*
AC	-	-	-	-	-	-	6	-	-	LSC(psbK-psbI)^***
AAT	-	-	-	-	4	-	-	-	-	LSC(accD-psaI)^***
ATA	4	4	4	-	4	4	-	4	4	LSC(petD-rpoA)^***
ATT	-	-	-	-	-	4	-	-	-	LSC(ycf1)^**
TTG	-	-	-	-	-	6	-	-	-	LSC(matK-rps16)^***
TTG	4	4	-	-	-	-	-	-	-	LSC(rps16)^*
TAT	4	4	4	4	4	-	4	-	4	LSC(trnT-UGU-trnL-UAA)^***
TAT	-	-	-	-	-	-	4	4	4	LSC(petD-rpoA)^***
TTA	4	4	4	4	4	4	4	4	4	LSC(trnV-UAC)^*
TTA	-	-	-	4	-	-	-	-	-	LSC(psaJ-rpl33)^***
TTA	4	4	4	4	5	4	-	-	-	SSC(rps15-ycf1)^***
GAA	4	4	4	4	4	4	4	4	4	LSC(accD-psaI)^***
AAAT	-	-	-	-	-	3	-	-	-	LSC(rps16-rtnQ-UUG)^***
AAAT	-	-	-	4	-	-	-	-	-	LSC(psbM-trnD-GUC)^***
AAAT	-	-	-	-	-	-	-	3	3	LSC(psaJ-rpl33)^***
AAAT	4	4	4	3	4	3	3	3	4	SSC(ndhG-ndhI)^***
AATA	3	3	3	3	3	3	3	3	3	LSC(rpl22)^**
AATA	3	3	3	3	3	3	3	3	3	SSC(ndhD)^**
AATT	3	3	3	3	3	3	3	3	3	LSC(atpI-rps2)^***
ATTT	-	-	-	-	-	-	-	-	3	LSC(rpoC1)^*
AGAA	-	-	-	-	-	-	-	3	3	LSC(trnS-GCU-trnR-UCU)^***
AGAA	3	3	3	3	3	3	3	-	-	LSC(trnG-UCC-trnR-UCU)^***
TTTA	3	3	3	3	3	3	3	3	-	LSC(rpoC1)^*
TTTA	3	3	3	3	3	3	-	-	-	LSC(rpoC1)^*
TTTA	-	-	-	3	-	-	4	3	3	LSC(psaA-ycf3)^***
TTAT	-	-	-	3	-	-	3	3	3	LSC(ycf3)^*
TTAT	-	-	-	3	-	-	-	3	3	LSC(trnT-UGU-trnL-UAA)^***
TTCT	-	-	-	3	-	-	3	3	3	LSC(rpl16)^*
TAAT	3	3	3	-	3	3	-	-	-	LSC(psbM-trnD-GUC)^***
AAATA	-	-	-	-	-	-	-	3	-	LSC(atpH-atpI)^***
AATTA	-	-	-	-	-	3	-	-	-	LSC(rbcL-accD)^***
AAATA	-	-	-	-	-	-	3	3	-	LSC(atpH-atpI)^***
TTTAC	3	3	3	-	3	-	-	3	-	LSC(rpoC1)^*
TTAAG	-	-	-	-	3	-	-	-	3	LSC(accD-psaI)^***

* Intron region

** Coding region

*** Intergenic region