Table 1. Statistics of mapping depth, coverage, and all types of SVs.
| Pig breeds | Number | Average sequencing depth | Average sequencing coverage (%) | Structure variants | ||
|---|---|---|---|---|---|---|
| Deletion | Inversion | Tandem duplication | ||||
| Min | 6 | 26.3 | 88.4 | 28,415 | 2,919 | 870 |
| Erhualian | 2 | 27.0 | 88.4 | 22,590 | 2,343 | 666 |
| Hetao | 6 | 24.7 | 88.1 | 30,113 | 2,913 | 894 |
| Laiwu | 6 | 26.8 | 88.2 | 28,325 | 2,910 | 894 |
| Luchuan | 6 | 25.8 | 88.4 | 28,404 | 2,722 | 897 |
| Bamaxiang | 6 | 27.2 | 88.4 | 31,284 | 2,950 | 1,045 |
| Wuzhishan | 6 | 26.5 | 88.5 | 32,583 | 2,953 | 1,026 |
| Tibetan (Gansu) | 4 | 26.0 | 88.3 | 26,296 | 2,579 | 766 |
| Tibetan (Sichuan) | 6 | 27.3 | 88.5 | 31,992 | 2,977 | 1,017 |
| Tibetan (Tibet) | 6 | 24.2 | 88.5 | 32,358 | 2,984 | 951 |
| Tibetan (Yunnan) | 6 | 26.7 | 88.6 | 32,550 | 2,990 | 1,007 |
| Wild | 6 | 23.7 | 88.3 | 34,085 | 3.004 | 944 |