Table 2. Statistics of information of all types of SVs.
SV class | Merged set | Precise seta | Genotyped set | Average number of SV sites per individual | Median size of SV sites (bp) | Median size covered per individual (kb) | Median breakpoint precision (start position/end position bp) | Median allele counts per individual |
---|---|---|---|---|---|---|---|---|
Deletion | 59,138 | 33,628b | 28,685 | 17,378 | 311 | 109,095 | 6/2 | 24,049 |
Inversion | 4,938 | 547 | 1,346 | 2,009 | 34,028 | 179,122 | 33/41 | 1,961 |
Tandem duplication | 2,845 | 534 | 656 | 470 | 4,929 | 41,449 | 40/46.5 | 402 |
aSVs < 60 kb
b56.86% of deletions have precise breakpoints.