TABLE 1 .
Tally of the biological pathways that were significantly affected by germ statusa
| Gene set | Gene set description | No. of upregulated pathways (GF/C > 1) |
No. of downregulated pathways (GF/C < 1) |
No. of pathways showing intraset discordance |
|---|---|---|---|---|
| T | T (this study) | 16 | 63 | 17 |
| P | P (this study) | 30 | 38 | 2 |
| M | T (previous reports) | 89 | 59 | 236 |
| Concordant[T,P,M] | Concordant in T, P, and M | 28 | 8 | 0 |
| Concordant[T,P] | Concordant in T and P | 39 | 32 | 1 |
| Concordant[T,M] | Concordant in T and M | 21 | 90 | 19 |
| Discordant[T≠P] | In T and/or P; discordant between them | 4 | 9 | 0 |
| Discordant[T\P] | In T; discordant compared to P | 4 | 0 | 0 |
| Discordant[P\T] | In P; discordant compared to T | 21 | 16 | 0 |
| Invariant[P] | In P; unaffected by sex and strain | 21 | 4 | 0 |
a
T, transcriptome; P, proteome; M, meta-analysis.