Table 2.

CGDV supported data types, corresponding file formats and description of the plot

S.No.	Data type	File format	Circular plot
1	VCF	vcf version 4.1	SNP and InDel with their sequencing depth
2	CNVnator output	raw output of CNVnator	Amplification and deletion with their size
3	ChIPSeq	raw output from MACS in XLS format	Peaks and tag density with their p-value
4	Gene fusion output	raw output from fusion inspector	Links between various genes which are fused together with color intensity based upon number of reads supporting each fusion event
5	Cuffdiff output	raw output from Cuffdiff	FPKM values per gene /isoform
6	BED	Extended BED upto 12 data columns	Expression values per genome coordinate
7	Matrix-links	Data in a matrix format	Links between data in the row and column
8	BLAST output	BLAST output data in a tabular format (BLAST run with –m8 option)	Links between similarity among homologous sequences