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. Author manuscript; available in PMC: 2017 Oct 25.
Published in final edited form as: J Med Chem. 2017 Sep 1;60(17):7524–7538. doi: 10.1021/acs.jmedchem.7b00930

Table 1. Affinity of Triazine and Pyrimidine Core-Containing Molecules to PI3K and PI3K-Related Kinases.

binding constant Kd [nM]a
compd PI3Kα PI3Kβ PI3Kγ PI3Kδ mTOR PI3KC2β VPS34 PI4KCβ DNAPK mTOR/PI3Kα
1 1.5 11 25 25 12   820   230 40000 1600   8.0
2 1.2   3.5 11  3.5 61   540   130 27000     >30000 51
3 1.0   3.5 24 76    0.94    0.46     5100    >30000     >30000    0.94
4 3.5  36   130   260 19     2100   200 40000 1800  5.4
5   0.76   2.1   7.7  3.3 48 40 nd 40000 1300 63
6   0.62   3.8   2.6  3.3  3.3   580   250    >30000 9800  5.3
IC50, kinase assay [nM]b
compd PI3Kα PI3Kβ PI3Kγ PI3Kδ mTOR α542K/545K/1047Rc VPS34 DNAPK mTOR/PI3Kα
1 33 661 708 451 89 63/136/36 8486 8567  2.6
4 45 607 778 110 94  111/216/87 2581 6917 13
a

Dissociation constants (Kd) were determined using ScanMax technology (DiscoveRx) 26with 11-point 3-fold serial dilutions of the indicated compounds. Kd is the mean value from experiments performed in duplicate and calculated from standard dose–response curves using the Hill equation depicted in Experimental Section (n ≥ 2). A TreeSpot representation of a full kinase panel and kinase residual binding values are shown in Supporting Information Figure S1 and Table S2 for all above compounds except compound 2.

b

Prokinase activity assays of the indicated enzymes and PI3Kα mutants.

c

Inhibition of PI3Kα E542K, E545K, and H2047R mutant activities are indicated. For these values, the wild type PI3Kα reference IC50 values were 122 nM for 1 and 142 nM for 4.