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. Author manuscript; available in PMC: 2017 Oct 25.
Published in final edited form as: Neuroimage. 2016 Apr 1;134:281–294. doi: 10.1016/j.neuroimage.2016.03.051

Table 4.

Top: Acquisition parameters for 3T Siemens (Si) Trio scanners. Bottom: Test-retest reliabilities for selected ROIs, processed by Freesurfer. The ROIs are gray matter volume (GMV), subcortical gray matter volume (scGMV), cortex volume (cVol), cortical white matter volume (cWMV), and the volumes of the lateral ventricle (LV), amygdala (Amyg), thalamus (Thal), hippocampus (Hipp), caudate (Caud), and finally the estimated total intracranial volume (eTIV). Test-retest reliability is computed as within-site ICC(1,1)

16 17 18 19 20
TR (ms) 2300 2150 1900 1900 1800
TE (ms) 2.98 3.40 3.03 2.52 3.01
Strength (T) 3 3 3 3 3
TI (ms) 900 1100 900 900 900
Flip Angle (°) 9 8 9 9 9
Make Si Si Si Si Si
Voxel Size (mm) 1×1×1 1×1×1 1×1×1 1×1×1 .86×.86×.86
Distortion Correction N N N N N
Parallel Imaging 2 2 2 2 2
FOV (mm) 256×256×176 256×256×192 256×256×176 256×256×192 220×220×179
Read Out Direction HF RL AP FH FH
Head coil # channels 12 12 12 32 32
Model Trio Trio Trio Trio Trio
OS MRB17 VB17 VB17A VB17 MRB19
Acq. Time (min) 05:03 04:59 04:26 05:26 06:25
orientation sag ax sag sag sag
# scans 24/24 23/24 23/24 24/24 24/24

Amyg (L) .55 .88 .77 .88 .91
Amyg (R) .85 .93 .81 .94 .93
Caud (L) .99 .95 .97 .97 .97
Caud (R) .97 .92 .98 .91 .95
GMV .99 .99 .98 .99 1
Hipp (L) .71 .96 .94 .93 .96
Hipp (R) .94 .94 .92 .83 .96
Thal (L) .45 .85 .80 .80 .88
Thal (R) .61 .95 .85 .96 .79
cVol .99 .98 .96 .99 1
cWMV 1 .99 .99 1 1
eTIV .97 1 1 1 1
scGMV .98 .98 .98 .98 .98