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The running time of HMMER under different cutoffs and Short-Pair on the Arabidopsis Thaliana RNA-Seq dataset
| Case | HMMER, | HMMER, | HMMER, | Short-Pair |
|---|---|---|---|---|
| E-value 10 | w/o filtration, | GA cutoff | ||
| E-value 10 | ||||
| Time (m) | 0.66 | 191.53 | 0.51 | 2.48 |
m: minutes. Note: The running time is the average running time of aligning 9,559,784 paired-end reads with a domain
