Table 1. Summary of sequencing data utilized in this study.
Sample | Clean Reads | HQ Clean reads | Clean Base | Total mapped | Total mapped Ratio (%) | Unique Match(%) | Known Gene | New Gene | All Gene |
---|---|---|---|---|---|---|---|---|---|
YCCZ1 | 41009930 | 40623584 | 6062919977 | 11603568 | 70.23 | 70.12 | 8586 (88.96%) | 668 | 9254 |
YCCZ2 | 59291792 | 58701420 | 8755948868 | 11607702 | 70.30 | 70.17 | 8735 (90.51%) | 705 | 9440 |
YCCZ3 | 47879596 | 47274196 | 7052765933 | 14351858 | 69.17 | 69.04 | 8714 (90.29%) | 699 | 9413 |
YCCZ4 | 56986574 | 56336928 | 8406700715 | 16735019 | 69.68 | 69.54 | 8745 (90.61%) | 704 | 9449 |
YCCZ5 | 52911126 | 52298678 | 7800954755 | 15641003 | 69.90 | 69.77 | 8700 (90.15%) | 702 | 9402 |
YCCZ6 | 60630086 | 60093188 | 8971315366 | 17870079 | 69.05 | 68.89 | 8746 (90.62%) | 699 | 9445 |
Note: Clean Reads = Raw Reads—Adapter—Low Quality–High N rate
HQ Clean Reads = Raw Reads—Clean Reads
Known Gene Percentage = number of detected / total genes in reference genome.