Table 1.
Calculated and Observed Activation Free Energies (kcal/mol) for Different Systemsa
system | ΔG‡cal | ΔG‡obs |
---|---|---|
KE07 (wt, PDB: 2RKX) | 19.8 | 20.1 |
R6 3/7 F (PDB: 3IIP) | 17.7 | 17.8 |
HG3 (PDB: 3NYD, S265T | 15.9 | 16.9 |
HG3.17 (PDB: 4BS0) | 13.8 | 13.7 |
HG3.3b | 16.1 | 16.0 |
HG3.7 | 14.6 | 14.2 |
water (cage) | 22.3 | 21.2 |
Our activation barriers that are evaluated (as in all of our previous works (e.g., see ref 18)) are referred to the chemical barriers. Namely, the barrier that corresponds to kcat in the enzyme and kcage in water. The observed result for kcage is taken when the format ion is used rather than when acetate ion was used as a base (extrapolation of the concentration to 55M). This point is discussed in detail in ref 18.