Table 2.
LRA Contributions (kcal/mol) of the Solvation Free Energies for Different Systemsa
| KE07 | R6 3/7 F | ||||
|---|---|---|---|---|---|
|
|
|
||||
| RS | TS | RS | TS | ||
|
|
−78.8 | −55.9 | −56.6 | −63.0 | |
|
|
−0.2 | 5.7 | 12.2 | 7.8 | |
| ΔGsolv | −39.5 | −25.1 | −22.2 | −27.6 | |
| HG3 | HG3.3b | HG3.7 | HG3.17 | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
|
|
|
|
||||||
| RS | TS | RS | TS | RS | TS | RS | TS | ||
|
|
−56.7 | −35.5 | −77.9 | −42.2 | −50.8 | −48.4 | −46.9 | −48.3 | |
|
|
0.4 | −0.1 | 17.0 | 4.2 | −2.2 | −0.3 | −11.9 | −12.2 | |
| ΔGsolv | −28.2 | −17.8 | −30.5 | −19.0 | −26.5 | −24.4 | −29.4 | −30.3 | |
UQ and U0 represent the charged and uncharged states, respectively. W and P represent water and protein, respectively. An important point to note here is that the difference in the KM values does not reflect the true change in binding energy as a protein residue (ASP/GLU) is part of the substrate. We also like to note that the LRA is much less quantitative that the FEP/US approach, but it still provides reliable qualitative information about the difference between GSD and TSS. Note that that as established in our earlier papers the LRA electrostatic contribution is a very good marker for the magnitude of the GSD and TSS.38