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. Author manuscript; available in PMC: 2017 Oct 26.
Published in final edited form as: ACS Catal. 2017 Mar 30;7(5):3301–3305. doi: 10.1021/acscatal.7b00171

Table 2.

LRA Contributions (kcal/mol) of the Solvation Free Energies for Different Systemsa

KE07 R6 3/7 F


RS TS RS TS
<UQU0>QW+P
−78.8 −55.9 −56.6 −63.0
<UQU0>0W+P
−0.2 5.7 12.2 7.8
ΔGsolv −39.5 −25.1 −22.2 −27.6
HG3 HG3.3b HG3.7 HG3.17




RS TS RS TS RS TS RS TS
<UQU0>QW+P
−56.7 −35.5 −77.9 −42.2 −50.8 −48.4 −46.9 −48.3
<UQU0>0W+P
0.4 −0.1 17.0 4.2 −2.2 −0.3 −11.9 −12.2
ΔGsolv −28.2 −17.8 −30.5 −19.0 −26.5 −24.4 −29.4 −30.3
a

UQ and U0 represent the charged and uncharged states, respectively. W and P represent water and protein, respectively. An important point to note here is that the difference in the KM values does not reflect the true change in binding energy as a protein residue (ASP/GLU) is part of the substrate. We also like to note that the LRA is much less quantitative that the FEP/US approach, but it still provides reliable qualitative information about the difference between GSD and TSS. Note that that as established in our earlier papers the LRA electrostatic contribution is a very good marker for the magnitude of the GSD and TSS.38