Table 3.
QTL identified with significant association to zinc toxicity tolerance related traits
| Trait | QTL | Chr | Interval (Mb) | Control | Zn stress | Ratio of stress to control | Previously reported | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| P valuea | Effectb | R 2(%)c | P value | Effect | R 2(%) | P value | Effect | R 2(%) | QTL | ||||
| SH | qSh1 | 1 | 37.93–38.54 | 2.85E-06 | −3.4 | 3.7 | 6.39E-06 | −1.8 | 4.7 | ||||
| qSh4a | 4 | 0.87–0.89 | 4.24E-05 | 1.7 | 3.8 | 2.06E-05 | 0.03 | 9.0 | |||||
| qSh4b | 4 | 16.38–16.87 | 5.42E-05 | 3.0 | 2.7 | 1.70E-05 | 2.3 | 4.2 | |||||
| qSh7 | 7 | 6.19–6.27 | 1.00E-05 | 2.6 | 3.3 | ||||||||
| qSh10 | 10 | 11.54–11.55 | 3.22E-05 | 2.2 | 3.9 | ||||||||
| RL | qRl2 | 2 | 11.10–11.11 | 1.99E-05 | −0.6 | 8.0 | 9.73E-05 | −0.05 | 6.9 | ||||
| qRl4 | 4 | 5.10–5.11 | 3.69E-05 | 0.4 | 6.8 | ||||||||
| qRl8 | 8 | 24.66–24.77 | 6.27E-05 | −0.9 | 7.0 | 1.31E-05 | −0.07 | 8.7 | |||||
| SFW | qSfw3a | 3 | 26.69–26.84 | 3.17E-06 | 87.7 | 6.7 | 3.91E-06 | 51.1 | 8.2 | ||||
| qSfw3b | 3 | 35.03–35.16 | 1.15E-06 | 95.9 | 7.3 | 1.70E-06 | 61.1 | 8.8 | qZNT-3 [11] | ||||
| qSfw4 | 4 | 16.41–16.58 | 8.09E-07 | 47.1 | 9.4 | ||||||||
| qSfw5a | 5 | 1.76–1.86 | 7.04E-05 | −31.2 | 6.0 | 2.63E-05 | −0.07 | 7.9 | |||||
| qSfw10 | 10 | 13.05–13.09 | 3.85E-05 | 24.6 | 6.4 | 2.05E-05 | 0.06 | 8.1 | |||||
| qSfw12 | 12 | 0.46–0.48 | 9.63E-07 | 64.9 | 9.3 | ||||||||
| SDW | qSdw1 | 1 | 22.54–22.59 | 8.77E-06 | 8.7 | 6.4 | 3.80E-05 | 8.2 | 6.3 | ||||
| qSdw3a | 3 | 26.69–26.84 | 6.20E-05 | 9.9 | 5.2 | 1.85E-06 | 8.3 | 4.4 | |||||
| qSdw3b | 3 | 35.01–35.22 | 3.12E-05 | 9.0 | 5.6 | 1.47E-06 | 8.6 | 10.5 | qZNT-3 [11] | ||||
| qSdw4 | 4 | 16.46–16.58 | 4.13E-05 | 5.5 | 6.2 | ||||||||
| qSdw5 | 5 | 7.24–7.55 | 1.04E-06 | 6.9 | 9.0 | ||||||||
| qSdw7 | 7 | 28.83–28.87 | 9.88E-06 | −7.7 | 6.3 | ||||||||
| qSdw8 | 8 | 19.65–19.68 | 2.55E-05 | 4.1 | 6.6 | ||||||||
| qSdw12 | 12 | 0.47–0.48 | 5.52E-05 | 8.6 | 5.2 | 5.11E-06 | 8.6 | 7.8 | |||||
| RDW | qRdw2 | 2 | 31.59–31.63 | 4.77E-06 | 0.8 | 9.8 | |||||||
| qRdw5a | 5 | 11.07–11.19 | 1.40E-05 | −1.3 | 8.7 | 2.80E-05 | −1.2 | 8.1 | |||||
| qRdw6 | 6 | ~10.38 | 1.68E-05 | −0.9 | 8.6 | 3.67E-05 | −0.06 | 8.4 | |||||
| qRdw12 | 12 | 0.46–0.48 | 9.22E-05 | −0.8 | 7.1 | 2.50E-05 | −0.05 | 8.8 | |||||
| SWC | qSwc5 | 5 | 1.83–2.03 | 8.47E-06 | −1.02 | 9.4 | 3.15E-05 | −0.01 | 7.3 | ||||
| qSwc9 | 9 | 10.81–11.19 | 2.65E-06 | 0.64 | 10.5 | 1.67E-06 | 0.01 | 8.6 | |||||
| qSwc10 | 10 | 13.05–13.12 | 2.31E-05 | 0.58 | 8.4 | 6.68E-05 | 0.01 | 6.7 | |||||
| SZn | qSZn5 | 5 | 11.18–11.19 | 1.57E-06 | 0.72 | 11.8 | |||||||
| qSZn11 | 11 | 17.63–17.83 | 4.10E-05 | −0.48 | 8.5 | ||||||||
aSame as in Fig. 1
bthe peak value in the chromosome region
cAllele effect with respect to the minor allele
dPhenotypic variance explained