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. Author manuscript; available in PMC: 2018 Nov 15.
Published in final edited form as: J Comput Chem. 2017 Sep 22;38(30):2641–2663. doi: 10.1002/jcc.25052

Figure 3.

Figure 3

Flowchart of iterative growth process for de novo DOCK. Input includes grids and parameters according to standard DOCK run and scoring functions, and fragment libraries. Anchors are oriented to binding site. Retained anchors are grown outward in a layer-by-layer approach analogous to anchor-and-grow. Complete molecules are written to file.