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. Author manuscript; available in PMC: 2018 Nov 15.
Published in final edited form as: J Comput Chem. 2017 Sep 22;38(30):2641–2663. doi: 10.1002/jcc.25052

Figure 4.

Figure 4

Scoring drives targeted growth (vertical blue arrow) and pruning/filtering (horizontal red arrow) in de novo design. Examples of targeted growth scoring functions include the DOCK grid energy score, footprint similarity score, and pharmacophore score. Examples of pruning/filtering criteria include Hungarian RMSD, molecular weight, number of rotatable bonds, scaffolds per layer, etc.