TABLE 3.

Variation in tandem-repeat regions among ciHHV-6

Parameter	Valuef
Tandem repeat regions in HHV-6B
Name	T1	STR (CA)n	R-DRa	T2	R0a	R1	R2Aa	R2B	R3	R4a
Location		Adjacent to DR-T1	DR	DR	U1	U86	U86–U89	U86–U89	U91–U94	After U100
Length (bp)	6	2	15	6	∼15	12	79	12–15	∼104	64
Unit		CA	NIb	TTAGGG	NI	NI	NI	NI	NI	NI
HSTc	−e	12	6	26	17	51	4	6	−	6
Z29c	−	1	4	77	13	53	4	8	−	4
HAPMAP NA10863	−	20	5	28	16	44	4	7	−	4
2B-9q34.3	−	20	5	26	19	44	4	7	−	4
CUM082	−	19	5	27	19	45	4	7	−	4
BAN519	−	19	5	28	16	44	4	7	−	4
GLA_3986	−	20	5	−	19	44	4	7	−	2
GLA_29221	−	19	5	−	19	45	4	7	−	4
GLA_34108	−	19	5	−	19	43	4	7	−	4
GLA_35629	−	−	5	−	19	45	4	7	−	4
HAPMAP NA07022	−	11	5	29	10	46	4	6	−	4
4B-11p15.5	−	11	5	26	10	47	4	6	−	4
LEI-ALD	−	11	5	25	10	47	4	6	−	4
HGDP01065	−	10	5	15	16	44	4	7	−	4
HGDP01077	−	10	5	19	16	43	4	7	−	4
DER512	−	10	5	21	16	43	4	7	−	4
ORCA1622	−	−	5	−	16	43	4	7	−	3
ORCA3835	−	−	5	−	16	43	4	7	−	3
ORCA1340	−	−	−	−	16	48	4	6	−	4
1-ciHHV-6B	−	12	5	16	16	43	4	6	−	4
COR264	−	12	9	28	19	44	4	7	−	2
HGDP00813	−	20	3	53	12	52	4	7	−	4
HGDP00092	−	1	2	19	17	55	4	11	−	3
Tandem-repeat regions in HHV-6A
Name	T1	T2	R5d	R1	R2	R3
Location		DR	U41–U42	U86	U86–U89	U91–U94
Length (bp)	6	6	∼191	∼12	12–18	104–105
		TTAGGG	NI	NI	NI	NI
AJc	−	51	1.7	52	43	8
U1102c	−	59	1.7	52	102	29
GS1/2c	−	51	1.7	52	78	8
LEI-1501	−	14	2.7	−	−	−
GLA_25506	−	−	2.7	32	−	−
GLA_4298	−	−	3.7	53	−	−
HAPMAP NA18999	−	13	1.7	−	−	−
3A-10q26.3	−	9	1.7	58	−	−
GLA_15137	−	−	1.7	55	−	−
7A-17p13.3	−	−	1.7	55	−	−

^aRepeats specific to HHV-6B. The coordinates of R-DR and R4 in HHV-6B strain HST are 5400 to 5489 and 152603 to 152986, respectively.

^bNI, repeats are not identical.

^cReference genomes are in boldface.

^dRepeat specific to HHV-6A; the coordinates of R5 in HHV-6A strain U1102 are 68124 to 68450; the other repeats are described in references 9 and 24.

^e−, analysis was not completed.

^fSamples that showed close phylogenetic relationship in Fig. 3 are grouped in the table, with a space between each group.