Table 2. Genetic distances (uncorrected p-distances) among Holarctic (HOL) and Californian (CAL) lineages of the common raven and the Chihuahuan (CHI) raven, for different partitions, the whole alignment and protein coding genes concatenated.
| Gene/Region | Comparison | Distance | SE | Length (bp)a |
|---|---|---|---|---|
| 12S rRNA | HOL-CAL | 0.0046 | 0.0022 | 980 |
| 12S rRNA | HOL-CHI | 0.0045 | 0.0021 | 980 |
| 12S rRNA | CAL-CHI | 0.0020 | 0.0014 | 980 |
| 16S rRNA | HOL-CAL | 0.0027 | 0.0013 | 1,601 |
| 16S rRNA | HOL-CHI | 0.0023 | 0.0013 | 1,601 |
| 16S rRNA | CAL-CHI | 0.0025 | 0.0013 | 1,601 |
| NAD1 | HOL-CAL | 0.026 | 0.008 | 975 |
| NAD1 | HOL-CHI | 0.026 | 0.008 | 975 |
| NAD1 | CAL-CHI | 0.007 | 0.003 | 975 |
| NAD2 | HOL-CAL | 0.031 | 0.005 | 1,041 |
| NAD2 | HOL-CHI | 0.032 | 0.006 | 1,041 |
| NAD2 | CAL-CHI | 0.021 | 0.004 | 1,041 |
| COXI | HOL-CAL | 0.026 | 0.004 | 1,551 |
| COXI | HOL-CHI | 0.026 | 0.004 | 1,551 |
| COXI | CAL-CHI | 0.004 | 0.002 | 1,551 |
| COXII | HOL-CAL | 0.019 | 0.005 | 681 |
| COXII | HOL-CHI | 0.020 | 0.005 | 681 |
| COXII | CAL-CHI | 0.011 | 0.003 | 681 |
| ATP8 | HOL-CAL | 0.033 | 0.013 | 153 |
| ATP8 | HOL-CHI | 0.023 | 0.012 | 153 |
| ATP8 | CAL-CHI | 0.010 | 0.004 | 153 |
| ATP6 | HOL-CAL | 0.058 | 0.009 | 684 |
| ATP6 | HOL-CHI | 0.055 | 0.009 | 684 |
| ATP6 | CAL-CHI | 0.028 | 0.007 | 684 |
| COXIII | HOL-CAL | 0.023 | 0.005 | 738 |
| COXIII | HOL-CHI | 0.025 | 0.005 | 738 |
| COXIII | CAL-CHI | 0.008 | 0.003 | 738 |
| NAD3 | HOL-CAL | 0.036 | 0.010 | 348 |
| NAD3 | HOL-CHI | 0.038 | 0.010 | 348 |
| NAD3 | CAL-CHI | 0.009 | 0.005 | 348 |
| NAD4l | HOL-CAL | 0.048 | 0.012 | 290 |
| NAD4l | HOL-CHI | 0.046 | 0.012 | 290 |
| NAD4l | CAL-CHI | 0.012 | 0.005 | 290 |
| NAD4 | HOL-CAL | 0.034 | 0.008 | 1,377 |
| NAD4 | HOL-CHI | 0.031 | 0.007 | 1,377 |
| NAD4 | CAL-CHI | 0.011 | 0.003 | 1,377 |
| NAD5 | HOL-CAL | 0.046 | 0.006 | 1,815 |
| NAD5 | HOL-CHI | 0.048 | 0.006 | 1,815 |
| NAD5 | CAL-CHI | 0.013 | 0.002 | 1,815 |
| COB | HOL-CAL | 0.039 | 0.007 | 1,093 |
| COB | HOL-CHI | 0.045 | 0.007 | 1,093 |
| COB | CAL-CHI | 0.017 | 0.004 | 1,093 |
| NAD6 | HOL-CAL | 0.043 | 0.010 | 518 |
| NAD6 | HOL-CHI | 0.042 | 0.010 | 518 |
| NAD6 | CAL-CHI | 0.013 | 0.005 | 518 |
| CR | HOL-CAL | 0.039 | 0.005 | 1,198 |
| CR | HOL-CHI | 0.043 | 0.005 | 1,198 |
| CR | CAL-CHI | 0.022 | 0.004 | 1,198 |
| Whole mt-genome | HOL-CAL | 0.029 | 0.001 | 16,553 |
| Whole mt-genome | HOL-CHI | 0.030 | 0.001 | 16,553 |
| Whole mt-genome | CAL-CHI | 0.011 | 0.001 | 16,553 |
| Protein coding genes | HOL-CAL | 0.037 | 0.002 | 11,275 |
| Protein coding genes | HOL-CHI | 0.038 | 0.002 | 11,275 |
| Protein coding genes | CAL-CHI | 0.013 | 0.001 | 11,275 |
a All alignment positions with missing data (gaps or ambiguous bases) were eliminated.