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Pathways cross verification analysis for NetPEA’.
| Input Gene Set | Positive | Negative | ||||||
|---|---|---|---|---|---|---|---|---|
| NetPEA’ | ORA | EnrichNet | GSEA | NetPEA’ | ORA | EnrichNet | GSEA | |
| Lung cancer [15] | 7 | 14 | 16 | 9 | 0 | 0 | 0 | 2 |
| Lung cancer [16] | 4 | 15 | 15 | 4 | 4 | 0 | 1 | 7 |
| Diabetes (down) | 6 | 19 | 16 | 6 | 4 | 0 | 0 | 2 |
| Diabetes (up) | 8 | 15 | 13 | 5 | 1 | 1 | 4 | 2 |
| Leukemia (down) | 7 | 15 | 16 | 5 | 1 | 0 | 0 | 6 |
| Leukemia (up) | 7 | 18 | 15 | 9 | 1 | 0 | 0 | 2 |
| Gender (down) | 8 | 17 | 15 | 9 | 2 | 0 | 1 | 2 |
| Gender (up) | 9 | 18 | 15 | 10 | 2 | 0 | 0 | 1 |
| p53 (down) | 6 | 14 | 14 | 11 | 1 | 0 | 1 | 3 |
| p53 (up) | 6 | 13 | 15 | 8 | 0 | 0 | 2 | 2 |
