Table 5.

Clus-HMC random forest prediction results of metabolic pathway map based on phylogenetic profile of gene families and singleton genes.

Pathway map number and name	NGF/S	Class	AUCPRC
00195 Photosynthesis	30	EM	0.383
00040 Pentose and glucuronate interconversions	194	CM	0.340
00500 Starch and sucrose metabolism	292	CM	0.336
00240 Pyrimidine metabolism	325	NM	0.317
00230 Purine metabolism	367	NM	0.312

Listed are the number of gene families/ singletons (NGF/S), the abbreviated metabolic class to which the map belongs, and the obtained areas under the prediction-recall curve (AUCPRC). Of all 94 maps, listed are those with AUCPRC > 0.25 as for those, predictions were significantly better than random (Figure 8). A complete list including all 94 pathways is provided as Supplementary Table 2.