Table 2.
Selected differentially up-regulated genes and their functions in S. Typhi biofilm cells
| Gene | Gene function | log2-fold change | p-value | q-value |
|---|---|---|---|---|
| STY1254 | Hypothetical protein | 7.92174 | 5.00E-05 | 0.00183687 |
| STY1255 | Hypothetical protein | 3.85549 | 0.00045 | 0.00997957 |
| yheA | Bacterioferritin-associated ferredoxin | 3.55635 | 2.00E-04 | 0.00568281 |
| rplD,rplW | 50S ribosomal subunit protein L4, 50S ribosomal subunit protein L23 | 3.50218 | 7.00E-04 | 0.0133293 |
| STY3469 | Hypothetical protein | 3.41257 | 5.00E-05 | 0.00183687 |
| priB | 30s ribosomal subunit protein S18 | 3.25938 | 2.00E-04 | 0.00568281 |
| rpsS | 50S ribosomal subunit protein L22 | 2.93416 | 5.00E-05 | 0.00183687 |
| STY4905 | Hypothetical protein | 2.8976 | 5.00E-05 | 0.00183687 |
| rplU | 50S ribosomal subunit protein L21 | 2.76352 | 5.00E-05 | 0.00183687 |
| rpmA | 50S ribosomal subunit protein L27 | 2.74781 | 5.00E-05 | 0.00183687 |
| rpsJ | 50S ribosomal subunit protein L3 | 2.65265 | 5.00E-05 | 0.00183687 |
| STY1229 | Hypothetical protein | 2.60152 | 2.00E-04 | 0.00568281 |
| lexA | LexA repressor | 2.58813 | 5.00E-05 | 0.00183687 |
| rplV | 30S ribosomal subunit protein S3 | 2.53445 | 0.00015 | 0.00458445 |
| rpsI | 30S ribosomal subunit protein S9 | 2.51349 | 5.00E-05 | 0.00183687 |
| rplR | 30S ribosomal subunit protein S5 | 2.4115 | 5.00E-05 | 0.00183687 |
| rpsF | 30s ribosomal protein S6 | 2.41089 | 5.00E-05 | 0.00183687 |
| yhdG | tRNA-dihydrouridine synthase B | 2.38131 | 1.00E-04 | 0.00324732 |
| rplK | 50S ribosomal subunit protein L11 | 2.35434 | 5.00E-05 | 0.00183687 |
| marA,marR | Multiple antibiotic resistance protein MarA, multiple antibiotic resistance protein MarR | 2.33256 | 0.00105 | 0.0185381 |
| pdhR | Pyruvate dehydrogenase complex repressor | 2.32856 | 5.00E-05 | 0.00183687 |
| rplM | 50S ribosomal subunit protein L13 | 2.32687 | 0.00135 | 0.022217 |
| STY4034 | Putative IS1351 transposase (pseudogene) | 2.30975 | 0.00125 | 0.0211453 |
| ygbA | Hypothetical protein | 2.27833 | 5.00E-05 | 0.00183687 |
| yfhP | DNA-binding transcriptional regulator IscR | 2.27551 | 0.00065 | 0.0127099 |
| rplA | 50S ribosomal subunit protein L1 | 2.24644 | 0.00205 | 0.0288986 |
| hmpA | Flavohemoprotein | 2.19086 | 9.00E-04 | 0.0162045 |
| rpsN | 30S ribosomal subunit protein S8 | 2.18809 | 5.00E-05 | 0.00183687 |
| rplB | 30S ribosomal subunit protein S19 | 2.13394 | 2.00E-04 | 0.00568281 |
| yejG | Hypothetical protein | 2.06615 | 5.00E-05 | 0.00183687 |
| STY1389 | Cyclic-di-GMP-binding biofilm dispersal mediator protein | 1.79388 | 0.00365 | 0.0443982 |