Table 1. Lineage marker SNPs. [14].

Marker SNP	Position	Nucleotide change
SNP 1 (Lineage 1)	Rv3597682	G/A a
SNP 2 (Lineage 2)	Rv3304966	C/T a
SNP 3 (Lineage 3)	Rv4266647	A/G
SNP4 (Lineage 4)	Rv2154724	T/G a
SNP 5 (Lineage 5)	Rv1377185	G/C
SNP 6 (Lineage 6)	Rv378404	G/A

^a The reference nucleotide corresponds to the one in the 3’-5’ strand