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Antimicrobial resistance gene detection by qPCR, qPCR array, and metagenomic sequencing
| ARG | % detection (n = 72) |
||
|---|---|---|---|
| qPCR | qPCR array | Metagenomic sequencing | |
| aadA1 | 100.0 | 55.6 | 0.0 |
| aac(6′)-Ie-aph(2″)-Ia | 0.0 | 0.0 | 0.0 |
| blaCMY-2 | 100.0 | 5.6 | 0.0 |
| blaCTX-M | 100.0 | 0.0 | 27.2 |
| blaKPC-2 | 100.0 | 0.0 | 0.0 |
| erm(B) | 100.0 | 88.9 | 44.4 |
| mecA | 0.0 | 0.0 | 0.0 |
| tet(A) | 100.0 | 93.1 | 98.6 |
| tet(B) | 100.0 | 86.1 | 100.0 |
| tet(M) | 100.0 | NAa | 84.7 |
NA, not applicable, tet(M) was not present on the array.
