Table 2.
QTLs for traits related to salt tolerance during seedling stage in an IR29/Hasawi RIL population in three environments
| Trait | QTL | Chr | Position (cM) | Marker interval | Allele | LOD | PVE (%) | Add | E | Method |
|---|---|---|---|---|---|---|---|---|---|---|
| SES | qSES1.1 | 1 | 110 | ud1000711-id1004348 | Hasawi | 3.2 | 10.7 | −0.31 | E1 | ICIM |
| qSES1.2 | 1 | 128 | id1004348-id1015258 | Hasawi | 4.9 | 8.8 | −0.27 | E1 | ICIM | |
| qSES1.3 | 1 | 170 | id1024972-id1023892 | Hasawi | 17.5 | 39.9 | −0.58 | E1 | IM, ICIM | |
| qSES1.4 | 1 | 175 | id1023892-id1017885 | Hasawi | 20.6 | 42.3 | −0.60 | E1 | IM, −ICIM | |
| qSES1.5 | 1 | 194 | id1003559-id1002308 | IR29 | 3.8 | 5.4 | 0.24 | E1 | -IM, ICIM | |
| qSES4.1 | 4 | 32 | id4008522-id4008092 | Hasawi | 3.8 | 5.8 | −0.23 | E1 | IM, ICIM | |
| SL | qSL1.1 | 1 | 59 | id1024836-id1025983 | Hasawi | 4.4 | 18.5 | −2.13 | E2 | IM, ICIM |
| qSL1.2 | 1 | 169 | id1024972-id1023892 | Hasawi | 6.5 | 17.9 | −3.25 | E1 | IM, ICIM | |
| qSL1.3 | 1 | 177 | id1023892-id1017885 | Hasawi | 5.7 | 19.5 | −3.40 | E1 | IM, ICIM | |
| qSL1.4 | 1 | 221 | id1024836-id1016633 | IR29 | 5.6 | 15.3 | 3.36 | E1 | IM, ICIM | |
| qSL12.1 | 12 | 58 | id12007988-id12005823 | IR29 | 3.3 | 7.2 | 2.23 | E1 | IM, ICIM | |
| RL | qRL1.1 | 1 | 168 | id1024972- id1023892 | Hasawi | 4.8 | 14.3 | −1.09 | E1 | IM, ICIM |
| qRL1.2 | 1 | 175 | id1023892-id1017885 | Hasawi | 4.2 | 13.5 | −1.06 | E1 | IM, ICIM | |
| qRL3.1 | 3 | 104 | id3200001-id3010345 | Hasawi | 3.2 | 21.9 | −1.53 | E1 | IM | |
| qRL11.1 | 11 | 22 | id11007488-id11008862 | IR29 | 5.0 | 14.7 | 2.11 | E1 | IM, ICIM | |
| FWsht | qFWsht1.1 | 1 | 0 | id1002899-id1016436 | Hasawi | 5.5 | 10.2 | −0.09 | E1 | IM, ICIM |
| qFWsht1.2 | 1 | 175 | id1023892-id1017885 | Hasawi | 3.6 | 21.1 | −0.12 | E1 | IM | |
| qFWsht1.3 | 1 | 194 | id1003559-id1002308 | Hasawi | 4.5 | 13.8 | −0.11 | E1 | IM | |
| qFWsht2.1 | 2 | 55 | id2007526-fd12 | Hasawi | 3.1 | 27.2 | −0.12 | E2 | IM, ICIM | |
| qFWsht4.1 | 4 | 12 | id4003259-id4007105 | IR29 | 6.1 | 28.9 | 0.14 | E1 | IM, ICIM | |
| qFWsht4.2 | 4 | 32 | id4008522-id4008092 | IR29 | 4.3 | 8.8 | 0.08 | E1 | IM, ICIM | |
| qFWsht6.1 | 6 | 115 | id6016941-id6001397 | IR29 | 3.2 | 37.8 | 0.22 | E2 | IM, ICIM | |
| qFWsht6.1 | 6 | 115 | id6016941-id6001397 | IR29 | 3.3 | 47.1 | 0.56 | E3 | IM, ICIM | |
| qFWsht8.1 | 8 | 105 | id8007301-id8000240 | IR29 | 3.5 | 47.1 | 0.55 | E3 | IM, ICIM | |
| qFWsht12.1 | 12 | 78 | id12003019-id12005205 | IR29 | 4.4 | 8.0 | 0.09 | E1 | ICIM | |
| DWsht | qDWsht1.1 | 1 | 0 | id1002899-id1016436 | Hasawi | 3.4 | 5.5 | −0.02 | E1 | IM, ICIM |
| qDWsht1.2 | 1 | 175 | id1023892-id1017885 | Hasawi | 3.4 | 19.6 | −0.03 | E1 | IM | |
| qDWsht1.3 | 1 | 194 | id1003559-id1002308 | Hasawi | 3.9 | 12.0 | −0.02 | E1 | IM | |
| qDWsht4.1 | 4 | 13 | id4003259-id4007105 | IR29 | 8.3 | 30.1 | 0.03 | E1 | IM, ICIM | |
| qDWsht4.2 | 4 | 32 | id4008522-id4008092 | IR29 | 3.2 | 5.9 | 0.02 | E1 | IM, ICIM | |
| qDWsht5.1 | 5 | 38 | id5007714-id5014589 | IR29 | 3.2 | 46.9 | 0.12 | E3 | IM, ICIM | |
| qDWsht6.1 | 6 | 115 | id6016941-id6001397 | IR29 | 3.7 | 48.4 | 0.12 | E3 | IM, ICIM | |
| qDWsht7.1 | 7 | 107 | ud7000066-id7000461 | IR29 | 3.3 | 5.7 | 0.02 | E1 | IM, ICIM | |
| qDWsht8.1 | 8 | 105 | id8007301-id8000240 | IR29 | 3.8 | 47.2 | 0.12 | E3 | IM, ICIM | |
| qDWsht12.1 | 12 | 78 | id12003019-id12005205 | IR29 | 4.6 | 7.5 | 0.02 | E1 | IM, ICIM |
Chr Chromosome, LOD Log of odds, Add Additive effect, IM Interval mapping, ICIM Inclusive composite interval mapping, E Environment, E1 Philippines, E2 Senegal, E3 Tanzania, MI: Marker interval, PVE Phenotypic variation of the rice RIL population explained by each QTL