Table 2.

The PHP scripts written in this study.

PHP script name	Function
compartments.php	Relate the compartment with the protein code, and store that relationship in the “COMPARTMENT” table.
longregions.php	Once the data from the vsl2 files is loaded, this script reads the vsl2_files table and calculates the long disordered regions (regions with 30 or more consecutive disordered residues).
	This script then stores the results in the table “LONG_DISORDERED_REGIONS”, saving: the protein code, the position where the region starts and the length of the region.
meta.php	Load and process all the .meta files. The results are stored in the table “META_FILES”.
sum.php	Load and process all the pondrfit summary files. The results are stored in the table “PONDFIT_SUM”.
vlxt.php	Load and process all the .vlxt files. The results are stored in the table “VLXT_FILES”.
vsl2.php	Load and process all the .vsl2 files. The results are stored in the table “VSL2_FILES”.
pullXmlUniprot.php	Look for each protein at Uniprot.org and pull its XML.
parseXmlUniprot.php	Open each of the files retrieved by pullXmlUniprot.php, and look for the nodes in the XMLs that list the protein׳s biological processes and functions, and store them in an Excel file (that later will be loaded to the Database with the help of a EDI).