Table 2A.
Folding of chignolin in 20 NTP MD simulations at 300 K using FF12MC.
Time step (fssmt) | Aggregated simulation time (μssmt) | Aggregated native state population (%) |
Estimated folding time (nssmt) |
|||||
---|---|---|---|---|---|---|---|---|
Mean | SD | SE | Mean | LCL | UCL | Event | ||
1.00 | 0.632 | 3 | 7 | 2 | – | – | – | 4 |
1.00 | 1.264 | 7 | 17 | 4 | – | – | – | 7 |
1.00 | 1.896 | 14 | 22 | 5 | 87 | 53 | 145 | 15 |
1.00 | 2.528 | 18 | 25 | 5 | 92 | 56 | 150 | 16 |
1.00 | 3.160 | 22 | 26 | 6 | 82 | 53 | 129 | 19 |
1.00 | 3.792 | 26 | 26 | 6 | 79 | 51 | 123 | 20 |
1.00 | 4.424 | 30 | 26 | 6 | 79 | 51 | 123 | 20 |
1.00 | 5.056 | 31 | 25 | 6 | 79 | 51 | 123 | 20 |
1.00 | 5.688 | 33 | 24 | 5 | 79 | 51 | 123 | 20 |
1.00 | 6.320 | 33 | 23 | 5 | 79 | 51 | 123 | 20 |
1.00 | 6.952 | 34 | 22 | 5 | 79 | 51 | 123 | 20 |
1.00 | 7.584 | 35 | 21 | 5 | 79 | 51 | 123 | 20 |
1.00 | 8.216 | 35 | 21 | 5 | 79 | 51 | 123 | 20 |
1.00 | 8.848 | 35 | 20 | 5 | 79 | 51 | 123 | 20 |
1.00 | 9.480 | 36 | 20 | 4 | 79 | 51 | 123 | 20 |
1.00 | 12.640 | 36 | 14 | 3 | 79 | 51 | 123 | 20 |
1.00 | 15.800 | 38 | 13 | 3 | 79 | 51 | 123 | 20 |
1.00 | 18.960 | 36 | 12 | 3 | 79 | 51 | 123 | 20 |
1.00 | 22.120 | 35 | 13 | 3 | 79 | 51 | 123 | 20 |
1.00 | 25.280 | 35 | 12 | 3 | 79 | 51 | 123 | 20 |
1.00 | 28.440 | 35 | 12 | 3 | 79 | 51 | 123 | 20 |
1.00 | 31.600 | 35 | 12 | 3 | 79 | 51 | 123 | 20 |
Aggregated native state population: number of conformations from 20 simulations with CαβRMSDs of ≤1.96 Å divided by number of all conformations from the 20 simulations. All MD simulations were performed for 500 million time steps with conditions described in Methods and Table S1. SD: Standard deviation. SE: Standard error. LCL: Lower 95% confidence limit. UCL: Upper 95% confidence limit. Event: number of simulations that captured a folding event.