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. 2015 Sep 2;4:126–133. doi: 10.1016/j.bbrep.2015.08.023

Table 2B.

Folding of chignolin in 20 NTP MD simulations at 300 K using FF12MCstdm.

Time step (fssmt) Aggregated simulation time (μssmt) Aggregated native state population (%)
Estimated folding time (nssmt)
Mean SD SE Mean LCL UCL Event
3.16 0.632 3 8 2 4
3.16 1.264 8 17 4 10
3.16 1.896 16 23 5 95 55 163 13
3.16 2.528 21 22 5 74 47 118 18
3.16 3.160 24 21 5 73 47 114 19
3.16 3.792 28 21 5 74 48 117 19
3.16 4.424 31 20 4 72 47 112 20
3.16 5.056 34 20 4 72 47 112 20
3.16 5.688 36 20 4 72 47 112 20
3.16 6.320 38 19 4 72 47 112 20
3.16 6.952 38 18 4 72 47 112 20
3.16 7.584 37 17 4 72 47 112 20
3.16 8.216 37 17 4 72 47 112 20
3.16 8.848 37 17 4 72 47 112 20
3.16 9.480 37 17 4 72 47 112 20
3.16 12.640 39 15 3 72 47 112 20
3.16 15.800 39 15 3 72 47 112 20
3.16 18.960 38 13 3 72 47 112 20
3.16 22.120 37 12 3 72 47 112 20
3.16 25.280 37 11 2 72 47 112 20
3.16 28.440 37 9 2 72 47 112 20
3.16 31.600 37 7 2 72 47 112 20

Aggregated native state population: number of conformations from 20 simulations with CαβRMSDs of ≤1.96 Å divided by number of all conformations from the 20 simulations. All MD simulations were performed for 500 million time steps with conditions described in Methods and Table S1. SD: Standard deviation. SE: Standard error. LCL: Lower 95% confidence limit. UCL: Upper 95% confidence limit. Event: number of simulations that captured a folding event.