Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2017 Nov;27(11):1939–1949. doi: 10.1101/gr.220640.117

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© 2017 Yang et al.; Published by Cold Spring Harbor Laboratory Press

This article is distributed exclusively by Cold Spring Harbor Laboratory Press for the first six months after the full-issue publication date (see http://genome.cshlp.org/site/misc/terms.xhtml). After six months, it is available under a Creative Commons License (Attribution-NonCommercial 4.0 International), as described at http://creativecommons.org/licenses/by-nc/4.0/.

PMC Copyright notice

Figure 3. — Discrimination of pseudoreplicates (PR), biological replicates (BR), and nonreplicates (NR). (A) Reproducibility scores for the illustration example (hESC and IMR90 cell lines) in Figure 1. Red dots are the results in the original samples, and blue dots are the results after equalizing the sequencing depth in all samples. (B,C) Reproducibility scores for the BR and NR in the ENCODE 11 cancer cell lines. The triangle represents the score for a BR, and the box plot represents the distribution of the scores for NRs. (B) Reproducibility scores for BRs and NRs in all cell types. (C) SCC for BRs and the corresponding NRs in each cell type. From left to right, the cell lines are ordered according to the average sequencing depths of the biological replicates.