Table 1.

SNV association tests

Variant	Chr	Position	A1	A2	MAF (cases)	MAF (controls)	Odds ratio	p	Gene
exm679123	8	6272353	G	A	0.00460	0.00199	1.196	3.78E‐07	MCPH1
exm237695	2	166003301	T	C	0.00180	0.00054	1.300	9.55E‐06	SCN3A
exm1212971	16	4253250	T	C	0.00055	0.00004	1.683	1.23E‐05	SRL
exm1511038	19	56539847	A	G	0.00055	0.00000	1.747	1.72E‐05	NLRP5
exm1217358	16	11001377	C	G	0.00000	0.00058	0.646	3.12E‐05	CIITA
exm750535	9	36147794	G	A	0.00090	0.00018	1.433	3.91E‐05	GLIPR2
exm843062	10	95400694	A	C	0.00574	0.00845	0.911	5.13E‐05	PDE6C
exm1330168	17	43308023	G	A	0.00015	0.00098	0.730	7.13E‐05	FMNL1
exm491315	5	142593652	C	T	0.00674	0.00906	0.917	7.40E‐05	ARHGAP26
exm1055306	13	20224268	G	T	0.00020	0.00094	0.743	7.67E‐05	MPHOSPH8
exm252299	2	189932953	A	G	0.00140	0.00065	1.278	8.85E‐05	COL5A2
exm888875	11	8478972	G	C	0.00045	0.00152	0.761	9.42E‐05	STK33

SNV association test results, limited to p < 1 × 10⁻⁴ and MAF < 0.01. Variant column denotes Exome chip probe ID. “Chr” column gives chromosome. Chromosome and position are according to human genome build 37. A1 and A2 are the alleles for each variant. Odds ratio is for the A1 allele.