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(A) Graphical 2D projection of the structure of VsCL96, a Ty1/copia TAR repeat with complete protein domains including GAG, PROT, INT, RT and RH in order. Each dot represents a sequence read and each line represents similarity hits between dots. The protein domains are highlighted in different colors. (B) Read depth of each contig within CL96. x-axial: read depth, y-axial: contig length.
