Table 2. Repeat composition of the Vallisneria spinulosa genome estimated from the Illumina sequencing data.
Repeat type | Lineage | Genome proportion (%) |
---|---|---|
Retroelements | ||
Ty-3/Gypsy | ||
Chromovirus | 31.582 | |
Tat/Ogre | 0 | |
Athila | 0 | |
Unclassified | 0.020 | |
Ty-1/Copia | ||
Maximus | 6.427 | |
Angela | 0 | |
Bianca | 0 | |
Tork | 1.905 | |
Ivana/Oryco | 0 | |
AleII | 0.928 | |
TAR | 0.185 | |
AleI/Retrofit | 1.812 | |
Unclassified | 0.161 | |
LINE | 0.460 | |
SINE | 0 | |
Other | 0.023 | |
DNA transposons | 0.514 | |
Satellite repeats | 0.013 | |
rDNA | 0.351 | |
Unclassified | 0.977 | |
Chloroplast | 2.704 | |
Total | 48.062 |